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...tgagttgtatttgaatgcacatataccaagcttattgtagaacccatggtctatagttttggcaatatacgtgctaaaccccacctatgtttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTACCGTAACTTGTTCCCAATATGGGCTCTTGGAGAGTTTCGGAGACGAATTG
species | Zea mays |
transcript | GRMZM2G086590_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAA GAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTACEST: gi|33091400|gb|CF051394.1|CF051394
genomic: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAAgtaaggcttc ... ttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTAC
EST: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAA GAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTACEST: gi|5714121|gb|AI944106.1|AI944106
genomic: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAAgtaaggcttc ... ttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTAC
EST: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAA GAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTACEST: gi|32796776|gb|CD949012.1|CD949012
genomic: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAAgtaaggcttc ... ttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTAC
EST: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAA GAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTACEST: gi|32797065|gb|CD949301.1|CD949301
genomic: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAAgtaaggcttc ... ttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTAC
EST: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAA GAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTAC
genomic: CAAAAGAACTGATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAAgtaaggcttc ... ttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTAC
atggtctatagttttggcaatatacgtgctaaaccccacctatgtttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTACCGTAACTTGTTCCCAATATGGGCTCTTGGAGAGTTTCGGAGACGAATTG
tatagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttgtatttgaatgcacatataccaagcttattgtagaacccatggtctatagttttggcaatatacgtgctaaaccccacctatgtttgatcacagGAACACATTGGGAGCTTCAATTGTTCCTTTTACTTCAACTATGGAAACTACCGTAACTTGTTCCCAATATGGGCTCTTGGAGAGTTTCGGAGACGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - -tgaatgc
- - - - - - - - - - - - -ccaagct
- - - - - - - - - - - - - - - - - - - - - - catggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaaa