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...ttatcatgtgaattgttcccatctagccagtccatcaagtagtttagttcttaaagcattatatatcattagtgatggtcttcattttaagatttaccagGTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGTTGGCTTTAATTTATGCTGGACAG
species | Zea mays |
transcript | GRMZM2G086590_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCG GTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGEST: gi|32850709|gb|CD990390.1|CD990390
genomic: AGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCGgtaattctta ... gatttaccagGTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATG
EST: AGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCG GTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGEST: gi|5714121|gb|AI944106.1|AI944106
genomic: AGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCGgtaattctta ... gatttaccagGTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATG
EST: AGCTAATCCCGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCG GTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGEST: gi|32850264|gb|CD989945.1|CD989945
genomic: AGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCGgtaattctta ... gatttaccagGTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATG
EST: AGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCG GTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGNGCAATG
genomic: AGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCGgtaattctta ... gatttaccagGTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATG
agttcttaaagcattatatatcattagtgatggtcttcattttaagatttaccagGTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGTTGGCTTTAATTTATGCTGGACAG
ttaaagcattatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatcatgtgaattgttcccatctagccagtccatcaagtagtttagttcttaaagcattatatatcattagtgatggtcttcattttaagatttaccagGTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGTTGGCTTTAATTTATGCTGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - catgtga
- - - - - - - - - - - - - - -gtccatc