1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaatactgtacaccccgttcccaacttccatgcctctgacttctgttttaagtaatgtaagtctcgcaccctttaattattaatattctgtcctcttatttcattgttcgtcatggccatgatcag
species | Zea mays |
transcript | GRMZM2G086484_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAEST: gi|19770206|gb|BQ034927.1|BQ034927
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAEST: gi|31351667|gb|CD436024.1|CD436024
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAEST: gi|71762836|gb|DR960773.1|DR960773
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAEST: gi|19769590|gb|BQ034311.1|BQ034311
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: GCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTGCTGTAAAGAAGGCAGAAGAGEST: gi|71311912|gb|DR792439.1|DR792439
genomic: GCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTT-CTGTAAAGAAGGCAGAAGAG
EST: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAEST: gi|33091533|gb|CF051527.1|CF051527
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: GAAATCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAEST: gi|40334296|gb|CK368366.1|CK368366
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: GAAACCAAAATACTTCTGAAGCTTCAGCTGATGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAEST: gi|71315320|gb|DR794272.1|DR794272
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: GAAACAAAAATATTTCTGAAGCTTCAGCTGACGCAGATGAAG ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaatactgtacaccccgttcccaacttccatgcctctgacttctgttttaagtaatgtaagtctcgcaccctttaattattaatattctgtcctcttatttcattgttcgtcatggccatgatcag
- - - - - - - CTGAAG
- - - - - - - - TGAAGC
- - - - - - - - - - - TCAGCT
- - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - CAGATG