1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcttcctgtggaatctgcctctccgttattcatttttgttattacaatgcagttaccaagtaagagagtaatggacggaccctcttttgatgttcacagGGCGGAGTCTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCCTCGGCGGGCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAG
species | Zea mays |
transcript | GRMZM2G086484_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT GGCGGAGTCTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCCEST: gi|71432874|gb|DR813924.1|DR813924
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... atgttcacagGGCGGAGTCTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCC
EST: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT GGCGGAGTCTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCC
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... atgttcacagGGCGGAGTCTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCC
caatgcagttaccaagtaagagagtaatggacggaccctcttttgatgttcacagGGCGGAGTCTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCCTCGGCGGGCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAG
ttttgat putative branch site (score: 4)
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttcctgtggaatctgcctctccgttattcatttttgttattacaatgcagttaccaagtaagagagtaatggacggaccctcttttgatgttcacagGGCGGAGTCTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCCTCGGCGGGCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - tcctgtg
- - - - - - - -ctgcctc
- - - - - - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - -caatgca