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gtaagctttgtactcttacaaaacatactacatgaaacttttatattctctagacattgtttttctcttaaactgagacatgctttcacaaaataagaacttgctctatcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAGCTTTTGTTTCACACCTCACTACTCCATCCCGCAATATGTTCTTTCAGCT
species | Zea mays |
transcript | GRMZM2G086430_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAGTAAATGCCATTGTTGGAAGCTACGTTACAAATTTATTCGAGGATAG GCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAGEST: gi|5847363|gb|AW000442.1|AW000442
genomic: CCAGTAAATGCCATTGTTGGAAGCTACGTTACAAATTTATTCGAGGATAGgtaagctttg ... tcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAG
EST: CCAGTAAATGCCTTTGTTGGAAGCTACATTACAAATTTATTCGAGGATAG GCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAGEST: gi|6194502|gb|AW146606.1|AW146606
genomic: CCAGTAAATGCCATTGTTGGAAGCTACGTTACAAATTTATTCGAGGATAGgtaagctttg ... tcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAG
EST: CCAGTAAATGCCTTTGTTGGAAGCTACATTACAAATTTATTCGAGGATAG GCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAGEST: gi|50330376|gb|CO525502.1|CO525502
genomic: CCAGTAAATGCCATTGTTGGAAGCTACGTTACAAATTTATTCGAGGATAGgtaagctttg ... tcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAG
EST: CCAGTAAATGCCATTGTTGGAAGCTACGTTACAAATTTATTCGAGGATAG GCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAGEST: gi|40335732|gb|CK369802.1|CK369802
genomic: CCAGTAAATGCCATTGTTGGAAGCTACGTTACAAATTTATTCGAGGATAGgtaagctttg ... tcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAG
EST: CCAGTAAATGCCTTTGTTGGAAGCTACATTACAAATTTATTCGAGGATAG GCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAG
genomic: CCAGTAAATGCCATTGTTGGAAGCTACGTTACAAATTTATTCGAGGATAGgtaagctttg ... tcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAG
tctcttaaactgagacatgctttcacaaaataagaacttgctctatcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAGCTTTTGTTTCACACCTCACTACTCCATCCCGCAATATGTTCTTTCAGCT
ctctatc CT-rich tract
aaaataagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttgtactcttacaaaacatactacatgaaacttttatattctctagacattgtttttctcttaaactgagacatgctttcacaaaataagaacttgctctatcatttgcagGCAAATTTTGTTGGCATCTGAAGTCATGGTTCTCATCGGTATAATCATGAGCTTTTGTTTCACACCTCACTACTCCATCCCGCAATATGTTCTTTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT