1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgtgcagctacccctttttccacgcccttttcatcttccaatctttgttggagctaccttctcatgtattcatatctttaaaaaatggttgtttgtcagGCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTATCAGAATCGAGCGTTGTCACCACATACTATTTTAGCTGGTCTACAAGTG
species | Zea mays |
transcript | GRMZM2G086430_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTTCAGCATACAGATTGCTAACTCCATCTGTGAAG GCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTAEST: gi|6194502|gb|AW146606.1|AW146606
genomic: GCTTCAGCATACAGATTGCTAACTCCATCTGTGAAGgtttccttcc ... tgtttgtcagGCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTA
EST: GCTTCAGCATACAGATTGCTAACTCCATCTGTGAAG GCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTAEST: gi|71772756|gb|DR970682.1|DR970682
genomic: GCTTCAGCATACAGATTGCTAACTCCATCTGTGAAGgtttccttcc ... tgtttgtcagGCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTA
EST: CAGCAACATCAATTGCTTCAGCATACAGATTGCTAACTCCATCTGTGAAG GCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTA
genomic: CAGCAACATCAATTGCTTCAGCATACAGATTGCTAACTCCATCTGTGAAGgtttccttcc ... tgtttgtcagGCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTA
ttgttggagctaccttctcatgtattcatatctttaaaaaatggttgtttgtcagGCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTATCAGAATCGAGCGTTGTCACCACATACTATTTTAGCTGGTCTACAAGTG
atgtattcatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgcagctacccctttttccacgcccttttcatcttccaatctttgttggagctaccttctcatgtattcatatctttaaaaaatggttgtttgtcagGCCCAGCTACTGATATACTTCATGCTCAAGTACGCAATGGAAATACTACTATCAGAATCGAGCGTTGTCACCACATACTATTTTAGCTGGTCTACAAGTG
- gtgcagc
- - - - - - - - - - ccacgcc
- - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat