1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaatttccactatcagttcacaactggaacgactcattgttttgtcgttctagaatggaaagggtcgacctattctctctgaaaaccctttttcttttcgcattccgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT
species | Zea mays |
transcript | GRMZM2G085916_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCGGTGAAATCATAAACTACGTGCAGTCCCTACAATG-CAAGTTGAG TTTATGTCCATGAAACTGGCCNCCGTGAATCCCCAGGTGGACTTAAATAGCEST: gi|78084502|gb|DV512895.1|DV512895
genomic: TCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
EST: GTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAG TTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGCEST: gi|6056473|gb|AW090863.1|AW090863
genomic: GTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
EST: TGCTCGGTGNNNNNNNAAACTACGTGCAGTCCCTACAATGACAAGTTGAG TTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
genomic: TGCTCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
agggtcgacctattctctctgaaaaccctttttcttttcgcattccgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT
ccctttttcttttcgc CT-rich tract
tttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttccactatcagttcacaactggaacgactcattgttttgtcgttctagaatggaaagggtcgacctattctctctgaaaaccctttttcttttcgcattccgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA