1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttcagatctggctgcacatttgtccgtgttcatttatccaaagcattgctaattcgttcagtttcatgccagcagtagctcatatcttagcaggaactaggaagggctgaactccataggagacctcaaatatatcgaatgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGTAACAGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACAT
species | Zea mays |
transcript | GRMZM2G080044_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAG GTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGTEST: gi|31405661|gb|CD484393.1|CD484393
genomic: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAGgttcagatct ... tgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGT
EST: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAG GTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGTEST: gi|31910982|gb|CD651696.1|CD651696
genomic: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAGgttcagatct ... tgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGT
EST: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAG GTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGTEST: gi|30306788|gb|CD001461.1|CD001461
genomic: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAGgttcagatct ... tgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGT
EST: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAG GTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGTEST: gi|211318170|gb|FL216128.1|FL216128
genomic: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAGgttcagatct ... tgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGT
EST: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAG GTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGT
genomic: GGATGGAATCTCTGGGCGGCAATAAATGACCGGCCTCTCCTGCCGTTCAGgttcagatct ... tgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGT
aactaggaagggctgaactccataggagacctcaaatatatcgaatgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGTAACAGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACAT
tcaaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagatctggctgcacatttgtccgtgttcatttatccaaagcattgctaattcgttcagtttcatgccagcagtagctcatatcttagcaggaactaggaagggctgaactccataggagacctcaaatatatcgaatgttttgcagGTTCCAGAACCTCGGCGAGATGATGACGCTCGGTAGAAATGATGCCGCGGTAACAGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG