1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgaacacttggtgcacgctcctcgacttccgcgcgcgtatttgtagctgaaattgaacttggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAAGGTTGGGATCAGCTGGTTCACAAAGGCTGCGATCGATTCGCTTGCCTC
species | Zea mays |
transcript | GRMZM2G080044_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCTG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCNCGGATGAGCCCCGGGTGAEST: gi|29544145|gb|CB604525.1|CB604525
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAEST: gi|31405661|gb|CD484393.1|CD484393
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAEST: gi|78025942|gb|DV494329.1|DV494329
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCTG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAEST: gi|31910982|gb|CD651696.1|CD651696
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGAGAGAEST: gi|78027652|gb|DV496039.1|DV496039
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCTG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAEST: gi|30306788|gb|CD001461.1|CD001461
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAEST: gi|211318170|gb|FL216128.1|FL216128
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
EST: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCG CTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
genomic: AGCAAGTTTCATTGAAGGGCTGACCTTGGAAGGACCTCTCGGACATGCCGgtacgaacac ... ggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGA
cgctcctcgacttccgcgcgcgtatttgtagctgaaattgaacttggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAAGGTTGGGATCAGCTGGTTCACAAAGGCTGCGATCGATTCGCTTGCCTC
tatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaacacttggtgcacgctcctcgacttccgcgcgcgtatttgtagctgaaattgaacttggctctgcagCTCGGAAGCTCGTGTACTGCCTCAGAATGCCCACGGATGAGCACCGGGTGAAGGTTGGGATCAGCTGGTTCACAAAGGCTGCGATCGATTCGCTTGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG