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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttttcatgttcagaattgttagttgagatgccagagaatatattgcttatacaatgttttcgtgccaattaaaattattattatcttaaactctgcagGTGAAAGACACTTTCTTAGGATCAGCTGTTATAGTAGGAAGGCGTTTTCCCATATGTCATGTACATGAGAACAATTCCATCGTTGAG

Basic information

species Zea mays
transcript GRMZM2G079658_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71437053|gb|DR818103.1|DR818103
EST:     CTGATCTTAGGCAG                         GTGAAAGACACTTTCTTAGGATCAGCTGTTATAGTAGGAAGGCGTTTTCCC
genomic: CTGATCTTAGGCAGgttataactc ... aactctgcagGTGAAAGACACTTTCTTAGGATCAGCTGTTATAGTAGGAAGGCGTTTTCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttatacaatgttttcgtgccaattaaaattattattatcttaaactctgcagGTGAAAGACACTTTCTTAGGATCAGCTGTTATAGTAGGAAGGCGTTTTCCCATATGTCATGTACATGAGAACAATTCCATCGTTGAG
                       aattaaaattattatt  TA-rich tract