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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgcccattagcgttctcatgatcatgattgccccttaagtatataatcaaccgttttgttcttgtccagcttattgaacttgctcgttataattacagGATAAGCCTTTTAGCTTTTCATGAAGCATTGGCACGCAAACCATGTGATCCTTTGATAGTGGCTACTTTTGCACTAGCCTTTTACCTGGGAGGTGATATG

Basic information

species Zea mays
transcript GRMZM2G079658_T03
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440866|gb|DR821916.1|DR821916
EST:     AAGCTGGATAATTTTCTTGCACCGAACAGGCCATGTCACAATAGTCTATG                         GATAAGCCTTTTAGCTTTTCATGAAGCATTGGCACGCAAACCATGTGATCC
genomic: AAGCTGGATAATTTTCTTGCACCGAACAGGCCATGTCACAATAGTCTATGgtgagttgaa ... ataattacagGATAAGCCTTTTAGCTTTTCATGAAGCATTGGCACGCAAACCATGTGATCC
EST: gi|71437053|gb|DR818103.1|DR818103
EST:     AAGCTGGATAATTTTCTTGCACCGAACAGGCCATGTCACAATAGTCTATG                         GATAAGCCTTTTAGCTTTTCATGAAGCATTGGCACGCAAACCATGTGATCC
genomic: AAGCTGGATAATTTTCTTGCACCGAACAGGCCATGTCACAATAGTCTATGgtgagttgaa ... ataattacagGATAAGCCTTTTAGCTTTTCATGAAGCATTGGCACGCAAACCATGTGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcaaccgttttgttcttgtccagcttattgaacttgctcgttataattacagGATAAGCCTTTTAGCTTTTCATGAAGCATTGGCACGCAAACCATGTGATCCTTTGATAGTGGCTACTTTTGCACTAGCCTTTTACCTGGGAGGTGATATG
                                           ttataattaca  TA-rich tract