1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttttttccccagccaaaagtcttgatcaaaactaaatatgttcagtcttctttgtaatatcatcttcgtttcctctgatggtcattgttcttgtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAACTAATTCAACTGCCACAGAATCGTCACCTGTTGCTGGCCCTCAAGAGAA
species | Zea mays |
transcript | GRMZM2G078541_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATCACAACAAGTGAAGGGCTACAAG CTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAAEST: gi|31910302|gb|CD651355.1|CD651355
genomic: CTGATCACAACAAGTGAAGGGCTACAAGgttttttccc ... gtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAA
EST: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAG CTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAAEST: gi|32929363|gb|CF034175.1|CF034175
genomic: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAGgttttttccc ... gtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAA
EST: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGGGAAGGGCTACAAG CTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCTGCTGCTGCTGCGGCAAEST: gi|5932688|gb|AW057049.1|AW057049
genomic: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAGgttttttccc ... gtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAA
EST: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAG CTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCTGCTGCTGCTGCGGCAAEST: gi|20508154|gb|BQ279915.1|BQ279915
genomic: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAGgttttttccc ... gtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAA
EST: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAG CTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCTGCTGCTGCTGCGGCAA
genomic: TCTTGATCTCTTGGAGCTAGATCTGATCACAACAAGTGAAGGGCTACAAGgttttttccc ... gtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAA
ttctttgtaatatcatcttcgtttcctctgatggtcattgttcttgtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAACTAATTCAACTGCCACAGAATCGTCACCTGTTGCTGGCCCTCAAGAGAA
ctctgat putative branch site (score: 122)
ttcttgt putative PPT
taatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttccccagccaaaagtcttgatcaaaactaaatatgttcagtcttctttgtaatatcatcttcgtttcctctgatggtcattgttcttgtgtacacagCTGCCTTGGAAGAACAAAGGATTACTCTAGCCGCCGCTGCTGCTGCGGCAACTAATTCAACTGCCACAGAATCGTCACCTGTTGCTGGCCCTCAAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA