1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggggcgcgtggactgtggagtggagaccagggttgaccctccgctggcagctggccgctcagatcctccccgtcctgatctcttcctcctcttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACCAGCAAG
species | Zea mays |
transcript | GRMZM2G078541_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACEST: gi|149071150|gb|EE159548.2|EE159548
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACEST: gi|149081109|gb|EE170213.2|EE170213
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACEST: gi|30087088|gb|CB885296.1|CB885296
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: GGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCG-CAGCAAGG-GG-CTCTCCAACCCTCCGGAGTCCGGACEST: gi|78118167|gb|DV536554.1|DV536554
genomic: GGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACEST: gi|149081984|gb|EE171150.2|EE171150
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACEST: gi|149014484|gb|EE044108.2|EE044108
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACEST: gi|211171921|gb|FK984131.1|FK984131
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAATCCGGACEST: gi|148949379|gb|EC894835.2|EC894835
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACEST: gi|71765670|gb|DR963607.1|DR963607
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
EST: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGG ATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
genomic: CCGCCTGCGAACGTTCGGCCCAGCTCCGGCGAGTTCCTCCGCAATTCCGGgtgagagtct ... cttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGAC
ggcagctggccgctcagatcctccccgtcctgatctcttcctcctcttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACCAGCAAG
tcctgat putative branch site (score: 37)
tcctccccgtcctgat CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggcgcgtggactgtggagtggagaccagggttgaccctccgctggcagctggccgctcagatcctccccgtcctgatctcttcctcctcttgctgcagATCTGCTGGAGCGCCAGCAAGGCGGTCTCTCCAACCCTCCGGAGTCCGGACCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - tggactg
- - - - - - - - - - - - - - - - - - - -tccgctg
- - - - - - - - - - - - - - - - - - - - - - - gcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gccgctc