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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAATACGGGCACAACTCGTGAACGACGGCGGCGCCTAGCGGTGACATCGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttccttcccagtctccatggctccaccagggcaccagtccatctcgatcttctccccagtctccagtggcccagtcccgttcatctctacaggt...

Basic information

species Zea mays
transcript GRMZM2G077143_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78080406|gb|DV508818.1|DV508818
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211526826|gb|FL147640.1|FL147640
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211526825|gb|FL147639.1|FL147639
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|148972535|gb|EE023494.2|EE023494
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|76910376|gb|DV163832.1|DV163832
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|61119534|gb|DN560495.1|DN560495
EST:     GTCCCCCTCGAGTCCTCCTCCAT-CCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: GT-CCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211526827|gb|FL147641.1|FL147641
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211529811|gb|FL147642.1|FL147642
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTAAATACGGGCACAACTCGTGAACGACGGCGGCGCCTAGCGGTGACATCGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttccttcccagtctccatggctccaccagggcaccagtccatctcgatcttctccccagtctccagtggcccagtcccgttcatctctacaggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG