1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtggacaaattgccattactcaatcaacataaattcactagttgctagtatcaaattttaccatgtctcttgccacactaattctgaactgtggtatgtactattaatcatgcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCATCTAAGCTTGGGGAGGAGACTGGCTTAAAAGTTCATGTTGGAGAAGAAC
species | Zea mays |
transcript | GRMZM2G074436_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|149089324|gb|EE178549.2|EE178549
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|4730506|gb|AI649672.1|AI649672
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|148955777|gb|EC901479.2|EC901479
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|149010193|gb|EE042010.2|EE042010
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|149075912|gb|EE164472.2|EE164472
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|148999505|gb|EE036470.2|EE036470
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|101397837|gb|EB820795.1|EB820795
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|32843641|gb|CD983322.1|CD983322
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|71439041|gb|DR820091.1|DR820091
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|5928783|gb|AW056075.1|AW056075
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|76933107|gb|DV173324.1|DV173324
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|71427128|gb|DR808178.1|DR808178
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|67031507|gb|CO460256.1|CO460256
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACCCAACAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|93282520|gb|EB674784.1|EB674784
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|74239243|gb|DT647157.1|DT647157
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|33100226|gb|CF060186.1|CF060186
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|71436211|gb|DR817261.1|DR817261
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|149015075|gb|EE044828.2|EE044828
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|78091242|gb|DV519616.1|DV519616
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|148970214|gb|EE021148.2|EE021148
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|32833079|gb|CD972757.1|CD972757
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|78115258|gb|DV533646.1|DV533646
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|74240884|gb|DT648798.1|DT648798
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|101399969|gb|EB821831.1|EB821831
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|149084452|gb|EE173910.2|EE173910
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|71431983|gb|DR813033.1|DR813033
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|32832044|gb|CD971722.1|CD971722
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACGCAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|91053445|gb|EB163863.1|EB163863
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAGAGGCTGCAGCAGCTTCTGTTTTGGCAEST: gi|32833441|gb|CD973119.1|CD973119
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAG AAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCA
genomic: ATGAGCTTAAAGAGAGAACAAATTATTATCTAACACAGCAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCA
ctcttgccacactaattctgaactgtggtatgtactattaatcatgcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCATCTAAGCTTGGGGAGGAGACTGGCTTAAAAGTTCATGTTGGAGAAGAAC
tattaat putative branch site (score: 126)
tatgtactattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggacaaattgccattactcaatcaacataaattcactagttgctagtatcaaattttaccatgtctcttgccacactaattctgaactgtggtatgtactattaatcatgcatgtgcagAAATATGATCTTGATCCAGCCGCAAAGGCTGCAGCAGCTTCTGTTTTGGCATCTAAGCTTGGGGAGGAGACTGGCTTAAAAGTTCATGTTGGAGAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC