Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacttttcatattgaacctgtactcttgtagtgacttatcttcactgcatatccctagcttgtagtttctactggtttgattgttcagtcctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG

Basic information

species Zea mays
transcript GRMZM2G074436_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074436_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g41990.1 (Oryza sativa), 3'ss of exon 1
tacttttcatattgaacctgtactcttgtagtgacttatcttcac-tgcatatccctagcttgtagtttctactggtttgattgttcagtcctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG
||| |||  | || | | || |    |  |||   || | ||  | | ||||| || |    | | | |||||| |||||||   |  |||||||||||||||| | ||| |||| |||||||| ||||| |||||||||||| || |||| ||| ||||||||||||| |||||||| || |||||  |  | |||||||
tacatttttt-ttaatcttgcagcaataaagttttttctttttgcatccatatgcccaaagggcaatatctacttgtttgatatcttggtcctgttctcagGTGGTGGCTATTGTCTATGCCATTATGACAACAAGAAATGAGCATATAACATGGGAAATGAGGGCAATCCGAGTGCTGCCGATGTTTGTCTTGCCTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32921707|gb|CF026519.1|CF026519
EST:     TACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|149089324|gb|EE178549.2|EE178549
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|4730506|gb|AI649672.1|AI649672
EST:     ATCGTACTCTCCGTCCTCGCCGA-                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: ATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|148955777|gb|EC901479.2|EC901479
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|149010193|gb|EE042010.2|EE042010
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|149075912|gb|EE164472.2|EE164472
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|148999505|gb|EE036470.2|EE036470
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|101397837|gb|EB820795.1|EB820795
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|89250724|gb|DY622510.1|DY622510
EST:     CTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCCTCCGTCCTCGCCGAG                         GTGTTAGCTGTCGCTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: CTCGCGCCGCGCCGTGCGGAACCTCATCGTACTC-TCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|71439041|gb|DR820091.1|DR820091
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|76933107|gb|DV173324.1|DV173324
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|71427128|gb|DR808178.1|DR808178
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|67031507|gb|CO460256.1|CO460256
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|93282520|gb|EB674784.1|EB674784
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|74239243|gb|DT647157.1|DT647157
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211168737|gb|FL336589.1|FL336589
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|33100226|gb|CF060186.1|CF060186
EST:     ACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: ACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211295370|gb|FL325959.1|FL325959
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|71436211|gb|DR817261.1|DR817261
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|149015075|gb|EE044828.2|EE044828
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|78091242|gb|DV519616.1|DV519616
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211105957|gb|FL330234.1|FL330234
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGGTAGCTGTTGTTTATGCCATCATGACGACNAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|148970214|gb|EE021148.2|EE021148
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|78115258|gb|DV533646.1|DV533646
EST:     TCTCGCGCCGCGCCGCGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|74240884|gb|DT648798.1|DT648798
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|149000732|gb|EE037950.2|EE037950
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCAT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCAT
EST: gi|101399969|gb|EB821831.1|EB821831
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|149084452|gb|EE173910.2|EE173910
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211455417|gb|FL343597.1|FL343597
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|71431983|gb|DR813033.1|DR813033
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211519332|gb|FL321899.1|FL321899
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|32832044|gb|CD971722.1|CD971722
EST:     GTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: GTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211218570|gb|FL341030.1|FL341030
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211110355|gb|FL307948.1|FL307948
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|91053445|gb|EB163863.1|EB163863
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|32833441|gb|CD973119.1|CD973119
EST:     ACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: ACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211136977|gb|FL317636.1|FL317636
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|94476107|gb|EB705065.1|EB705065
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACCAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
EST: gi|211435596|gb|FL348358.1|FL348358
EST:     TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAG                         GTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT
genomic: TCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 161

GTCCAAGGAGGAGGCAGCCGTGCACGCGCGGATGCGCCGGCGGACGCAGTTCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG


Block sizes: 33 (upstream exon), 46 (downstream exon)
Score: 82

GTCCAAGGAGGAGGCAGCCGTGCACGCGCGGATGCGCCGGCGGACGCAGTTCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 70

GTCCAAGGAGGAGGCAGCCGTGCACGCGCGGATGCGCCGGCGGACGCAGTTCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 269

GTCCAAGGAGGAGGCAGCCGTGCACGCGCGGATGCGCCGGCGGACGCAGTTCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt ... ctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatatccctagcttgtagtttctactggtttgattgttcagtcctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG
                             gtttgat  putative branch site (score: 269)
                                           tcctgttctc  putative PPT
                              tttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacttttcatattgaacctgtactcttgtagtgacttatcttcactgcatatccctagcttgtagtttctactggtttgattgttcagtcctgttctcagGTGTTAGCTGTTGTTTATGCCATCATGACGACAAGAAATGAGGATCTAACTTGGCAAATGAGGGCAATACGAGTGCTACCTATGTTCATTCTTCCTGCTG

- - -ttcatat
- - - - - - - -acctgta
- - - - - - - - - - - - - - - - - - - - - - ctgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg