1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggccggcctatccaactttctttgacagtgataaaaggtattgcttgatgtatattttgactaaaaagagttaattacagctcaacttgaatgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGAGCCCAAGAAGGTCAAGTCATTGGAGACTGAGTTTGTAAAATCAGTATC
species | Zea mays |
transcript | GRMZM2G074024_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|31663993|gb|CD573173.1|CD573173
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|211129102|gb|FL371420.1|FL371420
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|29543619|gb|CB603999.1|CB603999
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|211047338|gb|FL129969.1|FL129969
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|211158187|gb|FL395436.1|FL395436
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|211019672|gb|FL390358.1|FL390358
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GNGCTAATGAGTTTGGCCAGTTGGGAGATGGGEST: gi|76021288|gb|DT948458.1|DT948458
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|71420798|gb|DR805186.1|DR805186
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|76930470|gb|DV172399.1|DV172399
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
tgatgtatattttgactaaaaagagttaattacagctcaacttgaatgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGAGCCCAAGAAGGTCAAGTCATTGGAGACTGAGTTTGTAAAATCAGTATC
tatattttgactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggccggcctatccaactttctttgacagtgataaaaggtattgcttgatgtatattttgactaaaaagagttaattacagctcaacttgaatgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGAGCCCAAGAAGGTCAAGTCATTGGAGACTGAGTTTGTAAAATCAGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - -gataaaag
- - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacagct