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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaattgtgttagaatatagatgagtgctcaagttaatatccaactaaaatgaatatactcgtgctaattaccgcacaactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGATATGACTCAGAAATACAAGGACGCTTCCGTTGACAATAAAAATCTAACAG

Basic information

species Zea mays
transcript GRMZM2G073427_T04
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211302893|gb|FL267158.1|FL267158
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: gi|149077399|gb|EE166085.2|EE166085
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: gi|211441179|gb|FL267162.1|FL267162
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: gi|211302896|gb|FL267161.1|FL267161
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: gi|211441180|gb|FL267163.1|FL267163
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: gi|211441181|gb|FL267164.1|FL267164
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAAGA-TGCATCTTTTGCTGAAGCGACTGGCTG
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGA-GAATGCATCTTT-GCTGAAGCGACTGGCTG
EST: gi|211302889|gb|FL267154.1|FL267154
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatatccaactaaaatgaatatactcgtgctaattaccgcacaactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGATATGACTCAGAAATACAAGGACGCTTCCGTTGACAATAAAAATCTAACAG
                              tgctaat  putative branch site (score: 2)
                                               ctctcc  putative PPT
          aactaaaatgaatata  TA-rich tract