1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctttaccttgaatttacatgaaacatggtatgtgacgtcagaagcttaaccgtccatttctgtgatgaactgctcagttaaatttcggtgttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG
species | Zea mays |
transcript | GRMZM2G073427_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|149077399|gb|EE166085.2|EE166085
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|211441179|gb|FL267162.1|FL267162
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|211302896|gb|FL267161.1|FL267161
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|211441180|gb|FL267163.1|FL267163
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|211441181|gb|FL267164.1|FL267164
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|211302889|gb|FL267154.1|FL267154
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
ttaaccgtccatttctgtgatgaactgctcagttaaatttcggtgttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG
gcttaac putative branch site (score: 3)
agttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttaccttgaatttacatgaaacatggtatgtgacgtcagaagcttaaccgtccatttctgtgatgaactgctcagttaaatttcggtgttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG