1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctattgatagtacgtgttgctttttattcaggctttgtgacagatatatttattcttatctgtctttatttccttttctttttggatggcatatttcagCCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGGGTGGTCTGTCACTTGAAGGGTTTCTCTCAAAG
species | Zea mays |
transcript | GRMZM2G071071_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTTTACTACCTGCTGAGCTGGAGGACCTATTCTCAACAGCACCTGAAAA CCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGGGEST: gi|67019644|gb|CO448393.1|CO448393
genomic: GCTTTACTACCTGCTGAGCTGGAGGACCTATTCTCAACAGCACCTGAAAAgtaagatgtt ... catatttcagCCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGGG
EST: CTTTACTACCTGCTGAGCTGGAGGACCTATTCTCAACAGCNACCTGAAAA CCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGGEST: gi|67017730|gb|CO446479.1|CO446479
genomic: CTTTACTACCTGCTGAGCTGGAGGACCTATTCTCAACAGC-ACCTGAAAAgtaagatgtt ... catatttcagCCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGG
EST: CTTT-CTACCTGCTGAGCTGGAGGACCTATTCTCAACAGCACCTNGAAAA CCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGG
genomic: CTTTACTACCTGCTGAGCTGGAGGACCTATTCTCAACAGCACCT-GAAAAgtaagatgtt ... catatttcagCCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGG
tatatttattcttatctgtctttatttccttttctttttggatggcatatttcagCCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGGGTGGTCTGTCACTTGAAGGGTTTCTCTCAAAG
ttattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctattgatagtacgtgttgctttttattcaggctttgtgacagatatatttattcttatctgtctttatttccttttctttttggatggcatatttcagCCCATGGTCTTGCGATCCATATAAAGACTGTGCTGAAAAGAATGTGTTGGGTGGTCTGTCACTTGAAGGGTTTCTCTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - -tgttgct
- - - - - - - - - - - - - -ttcaggc