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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttcatgaaggctaccctgctttctatctagcaacatacagcataactacttaatgatatacccttttgtttttagttttgctgagattatttttattactgctttgcag

Basic information

species Zea mays
transcript GRMZM2G071071_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071071_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g59590.1 (Oryza sativa), 5'ss of exon 4
TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttcatgaaggctaccctgctttcta-tctagcaacatacagcataactacttaatgatatacccttttgtttttagttttgctgagattatttttattactgctttgcag
||| ||||| || |||||||| || ||||||||||| || ||| |||||||  |||||| |||||| || |||||||| |||||||||||||| || ||||| ||| ||||   || ||||| ||||||||  |||||               ||  ||| ||  ||   || || ||| | || ||| | |||  |  | |  |  ||||||  ||
TCTAAAGCCACGGTGTGTGAGGGCTTTGAAGCGGATTTTTATTCTATGTGACCATGACAGGGATGGAGCACTCAGTGATGTGGAGCTCAATGACTTTCAGgtttgtattcacttagtctaccttgctttctgctctagtg-------------ctttttattgccat--tctgttatttatggtgttgattaga--acctcttctggtgctttatag

upper sequence: GRMZM2G071071_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 4
TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttcatgaaggctaccctgctttctatctagcaacatacagcataactacttaatgatatacccttttgtt------tttagttttgctgagattatttttattactgctttgcag
 || |||   || ||| |||| || |||||||| ||||| ||| |||||||  |||||| |||||| ||| | ||||| |||||||||||||| || ||||| |||   ||  || ||| || || ||||| |  |  |   ||  ||| ||||| |   ||   || | || | ||      | | ||  || | ||| | |  || |  ||||||| |||
GCTAAAGTTACGCTGTATGAGGGCTTTGAAGCGTATATTTATTCTATGTGACCATGACAGGGATGGAGCTTTTAGTGATGTGGAGCTCAATGATTTTCAGgtttgtagccactaaagctgccttggtttct-ttgattagtgtaaggca-aactaatgcttgcactatcattctattaatacttctggtgatgttaagaatctccttttggctgctttacag

upper sequence: GRMZM2G071071_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G37730.2 (Glycine max), 5'ss of exon 4
TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttca----tgaaggctaccctgctttctatctagcaacataca-gcataactacttaatgatatacccttttgtttttagttttgctgagattatttttattactgctttgcag--------------------------------------------
||| ||||||||||| ||| |||| ||||||||||| || ||  | |||||| ||||||  |||||||| |||||||| |  ||||| ||||| || |||||     |||     | |||   || ||  |    ||| |     |  |     ||    | |  |  ||||  ||||    ||    |||| | | |    || | |||  |    | ||                                            
TCTAAAGCCTCGATGCGTGCGAGCCTTGAAGCGGATTTTTATCCTTTGTGATCATGACAGAGATGGTGCCCTCAGTGATGCTGAGCTGAATGATTTTCAGgttgcatttccccttttaagatgacactattaagcatcaaaattgaagcttatttattctcattgtattatagtctttcaccttagagtttgatcataaacattatgttatggtaaggtagtttgtttatatgatttgtgaaaaagctaacaaaatgtttaacag

upper sequence: GRMZM2G071071_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0128g00400.t01 (Vitis vinifera), 5'ss of exon 6
TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttcatgaaggctaccctgctttct---atctagcaacatacagcataactacttaatgatatacccttttgtttttagttttgctgagattatttttattactgctttgcag-----------------------------------
| ||||||| || ||||||||||| ||||| || ||||||||| | |||||| |||||| ||||||||| || || || |  ||  | ||||| || ||||| | | ||        | |   |  || ||   ||||  |    || |  || |     |||||||  |       ||| ||||||||  ||  |  | || |  || |   |  | |                                   
TTTGAAGCCCCGGTGTGTGAGAGCTTTGAAACGAATATTCATTTTGTGTGATCATGACAGGGATGGTGCCCTGAGCGATGCAGAATTAAATGATTTTCAGgtttctttttgctgcttcaaatttttttccttggatctgtcc-tgtagaaaatgatctaataatgatcgaaaacaa-gttcttagtttt-ttgcaaaaagttatggtattttgtgactgagattgttgaaggaattaataattagtgtaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211033158|gb|FL324559.1|FL324559
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGNGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211262704|gb|FL336158.1|FL336158
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211541156|gb|FL350248.1|FL350248
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGNGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211457514|gb|FL333640.1|FL333640
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|31356358|gb|CD440715.1|CD440715
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211089284|gb|FL354016.1|FL354016
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211398572|gb|FL307398.1|FL307398
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211154840|gb|FL160614.1|FL160614
EST:     ATAATGACAAGGATGGNGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTTCCGGCGTTTTA
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGT-CCGGTGTTTTA
EST: gi|211446538|gb|FL323007.1|FL323007
EST:     AATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGGAATTCCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTNA
genomic: AATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATG-AATTCC-AGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTT-A
EST: gi|211138146|gb|FL346257.1|FL346257
EST:     AATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGGAATTCCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTNA
genomic: AATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATG-AATTCC-AGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTT-A
EST: gi|211187788|gb|FL309828.1|FL309828
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211518365|gb|FL160583.1|FL160583
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCANGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211061498|gb|FL337020.1|FL337020
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|149010209|gb|EE042027.2|EE042027
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTTAA
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTT-AA
EST: gi|211390703|gb|FL307361.1|FL307361
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211012714|gb|FL335926.1|FL335926
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211090835|gb|FL316176.1|FL316176
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211153245|gb|FL160610.1|FL160610
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATT-CCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|31355399|gb|CD439756.1|CD439756
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211233493|gb|FL365278.1|FL365278
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211153233|gb|FL160598.1|FL160598
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGNGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211456937|gb|FL307054.1|FL307054
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211417795|gb|FL360177.1|FL360177
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211518376|gb|FL160594.1|FL160594
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATG-AATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|211043224|gb|FL315693.1|FL315693
EST:     ATAATGACGAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211435034|gb|FL327505.1|FL327505
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGGGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|74244530|gb|DT652444.1|DT652444
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTNCA-TGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGT-AAG
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCT-CAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211300182|gb|FL348721.1|FL348721
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211095732|gb|FL312076.1|FL312076
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211081454|gb|FL360401.1|FL360401
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGNGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211480402|gb|FL326621.1|FL326621
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211153241|gb|FL160606.1|FL160606
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211450789|gb|FL323039.1|FL323039
EST:     ATAATGACAAGGATGNTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211153239|gb|FL160604.1|FL160604
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATT
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATG-AATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATT
EST: gi|211231218|gb|FL350459.1|FL350459
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211413974|gb|FL312350.1|FL312350
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211154846|gb|FL160620.1|FL160620
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGG
EST: gi|211331141|gb|FL342511.1|FL342511
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211298345|gb|FL366288.1|FL366288
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GNCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211080371|gb|FL313517.1|FL313517
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211295871|gb|FL347284.1|FL347284
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211203273|gb|FL344219.1|FL344219
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211154838|gb|FL160612.1|FL160612
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211153238|gb|FL160603.1|FL160603
EST:     ATAATGACAAGGATGGGGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGGGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211516015|gb|FL160581.1|FL160581
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATT-CCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|211025526|gb|FL313926.1|FL313926
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGGAATTCCAG                         GTCCGGNGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTTA
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATG-AATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTT-A
EST: gi|211516013|gb|FL160579.1|FL160579
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATT-CCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|211528081|gb|FL312425.1|FL312425
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGG-TGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|211138142|gb|FL346253.1|FL346253
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211438568|gb|FL360651.1|FL360651
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGNGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211518368|gb|FL160586.1|FL160586
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGNGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|211537206|gb|FL317063.1|FL317063
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211462139|gb|FL319570.1|FL319570
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATG-AATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|211154850|gb|FL160624.1|FL160624
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211518367|gb|FL160585.1|FL160585
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTAC
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTAC
EST: gi|211541334|gb|FL356795.1|FL356795
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG
EST: gi|211462546|gb|FL333196.1|FL333196
EST:     TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
genomic: TAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATG-AATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA
EST: gi|211135312|gb|FL346206.1|FL346206
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGNTAAA
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAA-
EST: gi|211494778|gb|FL325747.1|FL325747
EST:     ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGA-TTCCAG                         GTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTNAAG
genomic: ATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 210

TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAGAGAGTTGTTCAGGAGAAGATGCCTGAAGGCGTAAATGAAACTGGCCTTA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 134

TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAGAGAGTTGTTCAGGAGAAGATGCCTGAAGGCGTAAATGAAACTGGCCTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 97

TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAGAGAGTTGTTCAGGAGAAGATGCCTGAAGGCGTAAATGAAACTGGCCTTA


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 167

TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttc ... tgctttgcagGTCCGGTGTTTTAGTGCTCCTCTCCAGCCTACTGAAATTTCAGGAGTTAAGAGAGTTGTTCAGGAGAAGATGCCTGAAGGCGTAAATGAAACTGGCCTTA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGAAGCCTCGATGTGTGAGAGCGTTGAAGCGGATATTCATTATATGTGATAATGACAAGGATGGTGCTCTCAGTGACGTGGAGCTCAATGAATTCCAGgtctgtgttcatgaaggctaccctgctttctatctagcaacatacagcataactacttaatgatatacccttttgtttttagttttgctgagattatttttattactgctttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA