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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGTTCGTGCGTGCCTTTGTTTACAGGCGGCTGTCAAGTGTCAACATCCAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCTgtaagtcacctctctcacttgcagcttctccagcctctgaatcacatcattagatgcaaggcacgatgtacccgacgtaaggttggacgatgctgttgcg...

Basic information

species Zea mays
transcript GRMZM2G070937_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211227002|gb|FL457413.1|FL457413
EST:     CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCT                         GTTTACAGGCACAATATCCTCTTCACTTGGTTTACTCTCAAATCTCTTCTG
genomic: CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCTgtaagtcacc ... attcaaacagGTTTACAGGCACAATATCCTCTTCACTTGGTTTACTCTCAAATCTCTTCTG
EST: gi|211541922|gb|FL379342.1|FL379342
EST:     CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCT                         GTTTACAGGCACAATATCCTCTTCACTTGG
genomic: CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCTgtaagtcacc ... attcaaacagGTTTACAGGCACAATATCCTCTTCACTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAGTTCGTGCGTGCCTTTGTTTACAGGCGGCTGTCAAGTGTCAACATCCAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCTgtaagtcacctctctcacttgcagcttctccagcctctgaatcacatcattagatgcaaggcacgatgtacccgacgtaaggttggacgatgctgttgcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctctc