Sequence
atgc intronic sequence ATGC exonic sequence...atacttgcaatgatgtttccttcaacctcggtctcaatgatttggcatacagagttaactggttttgtagcacattctcttcggcgctgaattcaaacagGTTTACAGGCACAATATCCTCTTCACTTGGTTTACTCTCAAATCTCTTCTGGCTGGACCTGGTTGATAATCGGCTCACTGGACCTATCCTGGTCTCAACA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211227002|gb|FL457413.1|FL457413EST: CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCT GTTTACAGGCACAATATCCTCTTCACTTGGTTTACTCTCAAATCTCTTCTG
genomic: CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCTgtaagtcacc ... attcaaacagGTTTACAGGCACAATATCCTCTTCACTTGGTTTACTCTCAAATCTCTTCTG
EST:
gi|211541922|gb|FL379342.1|FL379342EST: CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCT GTTTACAGGCACAATATCCTCTTCACTTGG
genomic: CAGGGCACTCTCAGCGACAGCATTGGACAGCTCACCCAGCTCATGTACCTgtaagtcacc ... attcaaacagGTTTACAGGCACAATATCCTCTTCACTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catacagagttaactggttttgtagcacattctcttcggcgctgaattcaaacagGTTTACAGGCACAATATCCTCTTCACTTGGTTTACTCTCAAATCTCTTCTGGCTGGACCTGGTTGATAATCGGCTCACTGGACCTATCCTGGTCTCAACA
agttaac putative branch site (score: 3)
aattcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atacttgcaatgatgtttccttcaacctcggtctcaatgatttggcatacagagttaactggttttgtagcacattctcttcggcgctgaattcaaacagGTTTACAGGCACAATATCCTCTTCACTTGGTTTACTCTCAAATCTCTTCTGGCTGGACCTGGTTGATAATCGGCTCACTGGACCTATCCTGGTCTCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-tacttgc
- - - - - tgatgtt
- - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcgctg