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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagggcaagaagcttgtctcggccaccaaggagggtctgaagcttgatgagaccgaggatgagaagaagaggaaggaggagctgaaggagaagTTTGAGGGTCTGTGCAAGATCATCAAGGAGGTTCTGGGCGACAAGGTTGAGAAGGTTGTGGTGTCTGACCGTGTT

Basic information

species Zea mays
transcript GRMZM2G069651_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069651_T02 (Zea mays), 3'ss of exon 3
lower sequence: EDP01972 (Chlamydomonas reinhardtii), 3'ss of exon 6
--------------------------------------gtttgagggcaagaagcttgtctcggccaccaaggagggtctgaagcttgatgagaccgaggatgagaagaagaggaaggaggagctgaaggagaagTTTGAGGGTCTGTGCAAGATCATCAAGGAGGTTCTGGGCGACAAGGTTGAGAAGGTTGTGGTGTCTGACCGTGTT
                                      |  |||  | | || || | ||||   | ||  |     ||  |  |    || ||      |||     |||| |  || |      |   || ||     ||  |||  | ||| |    |||||     |     |||||  |||  ||       ||  || |  | |
cctaccgcatgtgctctcgcttgcacttctggcggaccggctgactgaacgatgcct-tctccctcgccttgccccctcccatcccccctgcgat-----atgcagGCAAGAAGCTGGTGTGCTGCACCAAGGAGGGCCTGGACCTGGACGAGAGCGAGGAGGAGAA---GAAGCGCAAGGAGGAGCTGGCCAGCCAGTTCGAGC-CGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagcttgatgagaccgaggatgagaagaagaggaaggaggagctgaaggagaagTTTGAGGGTCTGTGCAAGATCATCAAGGAGGTTCTGGGCGACAAGGTTGAGAAGGTTGTGGTGTCTGACCGTGTT
   gcttgat  putative branch site (score: 5)