Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCAGGCTGAGATCAACCAGCTGCTCTCACTCATCATCAACACCTTCTATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgccccgttaagtcgaagtctgggtgcatcttagtgtgttagtgtttgggcggtaacttgtgctatggtgtgattacacactgcggttaatactgtttctgacgcttgattttgcgctcctacttggtgctgttttttgtgcgacttctgcag

Basic information

species Zea mays
transcript GRMZM2G069651_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069651_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g30412.1 (Oryza sativa), 5'ss of exon 1
CTTTCAGGCTGAGATCAACCAGCTGCTCTCACTCATCATCAACACCTTCTATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgccccgttaagtcga--agtctgggtgcatcttagtgtgttagtgtttgggcggtaacttgtgctatggtgtgattacacactgcggttaatactgtttctgacgcttgattttgcgctcctacttggtgctgttttttgtgcgacttctgcag
||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||  || |||        |  | ||      | ||   |  |   | |   ||   | | |  ||  || || |||  ||  || |  || |   |                                                              
CTTCCAGGCCGAGATCAACCAGCTGCTGTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCCTCCGATgtaagtttgcgccgcccccgaaattaatcccctctcgtcgaggaatcgaaatcggtgcttgcttatgtgctctttgctgttgttgtacgcgtcgatctgt--------------------------------------------------------------

upper sequence: GRMZM2G069651_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ25533 (Selaginella moellendorffii), 5'ss of exon 1
CTTTCAGGCTGAGATCAACCAGCTGCTCTCACTCATCATCAACACCTTCTATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgccccgttaagtcgaagtctgggtgcatcttagtgtgttagtgtttgggcggtaacttgtgctatggtgtgattacacactgcggttaatactgtttctgacgcttgattttgcgctcctacttggtgctgttttttgtgcgacttctgcag
||| ||||| |||||||||||||| |||   ||||||||||||||||||||   |||||||||||||||| | |||||||||||   |||  | || ||||| |||       ||||  |    ||  ||    || ||| ||   |  |  | |  |  |  ||| |       || |||| | ||| |   ||   | | ||||||      |||||   |                                     
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagt-------gttagatgctcgttcggcgatattttactgctattctcatcgatctttgccttctttc----tgcgatttctcaccgatctttgcattctttctg-----cgatttccag-------------------------------------

upper sequence: GRMZM2G069651_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ29061 (Selaginella moellendorffii), 5'ss of exon 1
CTTTCAGGCTGAGATCAACCAGCTGCTCTCACTCATCATCAACACCTTCTATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgccccgttaagtcgaagtctgggtgcatcttagtgtgttagtgtttgggcggtaacttgtgctatggtgtgattacacactgcggttaatactgtttctgacgcttgattttgcgctcctacttggtgctgttttttgtgcgacttctgcag
 || |||||||||||||||||||| |||   |||||||||||||| |||||   |||||||||||| ||| | |||||||||||   |||  | || ||||| |||      ||     | |   |    || | | | |   | ||  |  ||       |   || ||   | ||||| | ||                                                                           
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagt--atttcgcctccttgttcttccagttcttgtcaaactctttcttctt----ctcatgctgcgc--cgctgtgactccag--------------------------------------------------------------------------

upper sequence: GRMZM2G069651_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ22362 (Selaginella moellendorffii), 5'ss of exon 1
CTTTCAGGCTGAGATCAACCAGCTGCTCTCACTCATCATCAACACCTTCTATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgccccgttaagtcgaagtctgggtgcatcttagtgtgttagtgtttgggcggtaacttgtgctatggtgtgattacacactgcggttaatactgtttctgacgcttgattttgcgctcctacttggtgctgttttttgtgcgacttctgcag
||| ||||| |||||||||||||| |||   ||||||||||||||||||||   |||||||||||||||| | |||||||||||   |||  | || ||||| |||       ||||  |    ||  ||    || | | || | |  |  | |  |  |  ||| |       || |||| | ||| |   ||     | ||||||      |||||   |                                     
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagt-------gttagatgctcgttcggcgatatttcactgcgattctcatcgatctttgccttctttc----tgcgatttctcaccgatctttgcgttctttctg-----cgatttccag-------------------------------------

upper sequence: GRMZM2G069651_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ17594 (Selaginella moellendorffii), 5'ss of exon 1
CTTTCAGGCTGAGATCAACCAGCTGCTCTCACTCATCATCAACACCTTCTATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgccccgttaagtcgaagtctgggtgcatcttagtgtgttagtgtttgggcggtaacttgtgctatggtgtgattacacactgcggttaatactgtttctgacgcttgattttgcgctcctacttggtgctgttttttgtgcgacttctgcag
 || |||||||||||||||||||| |||   |||||||||||||| |||||   |||||||||||| ||| | |||||||||||   |||  | || ||||| |||      ||     |||   |    || | | | |   | ||  |  ||       |   || ||  || ||||| | ||                                                                           
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagt--atttcgcc---tcgttcttccagttcttgtcaaactctttcttctt----ctcatgctgcgc--tgctgtgactccag--------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211321100|gb|FL262984.1|FL262984
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211227491|gb|FL262935.1|FL262935
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211175292|gb|FL098028.1|FL098028
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173615|gb|FL098015.1|FL098015
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173619|gb|FL098019.1|FL098019
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233685|gb|FL262980.1|FL262980
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211231618|gb|FL262960.1|FL262960
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233672|gb|FL262967.1|FL262967
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173620|gb|FL098020.1|FL098020
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|28931280|gb|CB334641.1|CB334641
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211227480|gb|FL262924.1|FL262924
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|4775968|gb|AI664971.1|AI664971
EST:     TTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: TTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211225431|gb|FL262920.1|FL262920
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173626|gb|FL098026.1|FL098026
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|13126015|gb|BG316465.1|BG316465
EST:     ATTCCAACAAGGAGATCTTACTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211171948|gb|FL098011.1|FL098011
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211231621|gb|FL262963.1|FL262963
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211229545|gb|FL262943.1|FL262943
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|67012785|gb|CO441534.1|CO441534
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211227482|gb|FL262926.1|FL262926
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|6742495|gb|AW313310.1|AW313310
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211229552|gb|FL262950.1|FL262950
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173625|gb|FL098025.1|FL098025
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173623|gb|FL098023.1|FL098023
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211171945|gb|FL098008.1|FL098008
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211321105|gb|FL262989.1|FL262989
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211229546|gb|FL262944.1|FL262944
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211231615|gb|FL262957.1|FL262957
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|19351542|gb|BM896074.1|BM896074
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233679|gb|FL262974.1|FL262974
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211175293|gb|FL098029.1|FL098029
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233673|gb|FL262968.1|FL262968
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211229548|gb|FL262946.1|FL262946
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211229547|gb|FL262945.1|FL262945
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|5342979|gb|AI795284.1|AI795284
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173613|gb|FL098013.1|FL098013
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173621|gb|FL098021.1|FL098021
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211175294|gb|FL098030.1|FL098030
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211227488|gb|FL262932.1|FL262932
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233676|gb|FL262971.1|FL262971
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211175291|gb|FL098027.1|FL098027
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211227484|gb|FL262928.1|FL262928
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211231622|gb|FL262964.1|FL262964
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211175296|gb|FL098032.1|FL098032
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173614|gb|FL098014.1|FL098014
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173618|gb|FL098018.1|FL098018
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211227485|gb|FL262929.1|FL262929
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211229543|gb|FL262941.1|FL262941
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211231620|gb|FL262962.1|FL262962
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211321099|gb|FL262983.1|FL262983
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211231619|gb|FL262961.1|FL262961
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|32930417|gb|CF035229.1|CF035229
EST:     ATTCCGACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173624|gb|FL098024.1|FL098024
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211175297|gb|FL098033.1|FL098033
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233682|gb|FL262977.1|FL262977
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211171947|gb|FL098010.1|FL098010
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211227487|gb|FL262931.1|FL262931
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|67039274|gb|CO465529.1|CO465529
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211229544|gb|FL262942.1|FL262942
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233684|gb|FL262979.1|FL262979
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211173612|gb|FL098012.1|FL098012
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
EST: gi|211233686|gb|FL262981.1|FL262981
EST:     ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGAT                         GCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT
genomic: ATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgc ... acttctgcagGCGTTGGACAAAATCAGGTTCGAGAGCCTCACTGACAAGAGCAAGCTCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTCAGGCTGAGATCAACCAGCTGCTCTCACTCATCATCAACACCTTCTATTCCAACAAGGAGATCTTCCTCCGGGAGCTCATTTCCAACTCTTCCGATgtaagtccgccccgttaagtcgaagtctgggtgcatcttagtgtgttagtgtttgggcggtaacttgtgctatggtgtgattacacactgcggttaatactgtttctgacgcttgattttgcgctcctacttggtgctgttttttgtgcgacttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA