1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTGTTGAGGAAGGGAAGATGGCCGATGAGATGATGCTCATCGGTAGTGGCATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTGgtaagaacaattctgcatgcttgttccatattgcatttcaataaagaatggtgaataggaagcttgataaaatcaagttctgctagaagatgtgtgaagt...
species | Zea mays |
transcript | GRMZM2G069596_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTG GACAAGAAGGCCCGATAGCTCAAGCGCTTTATGACCTTATTCTCGAGGACAEST: gi|16920058|gb|BM074478.1|BM074478
genomic: CATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTGgtaagaacaa ... ttattcacagGACAAGAAGGCCCGATAGCTCAAGCGCTTTATGACCTTATTCTCGAGGACA
EST: CATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTG GACAAGAAGGCCCGATAGCTCAAGCGCTTTATGACCTTATTCTCGAGGACAEST: gi|60339392|gb|DN206365.1|DN206365
genomic: CATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTGgtaagaacaa ... ttattcacagGACAAGAAGGCCCGATAGCTCAAGCGCTTTATGACCTTATTCTCGAGGACA
EST: CATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTG GACAAGAAGGCCCGATAGCTCAAGCGCTTTATGACCTTATTCTCGAGGACA
genomic: CATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTGgtaagaacaa ... ttattcacagGACAAGAAGGCCCGATAGCTCAAGCGCTTTATGACCTTATTCTCGAGGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGTTGAGGAAGGGAAGATGGCCGATGAGATGATGCTCATCGGTAGTGGCATTCTTGTCAAACCTGTTGTTCAGTGGGATGATAAGATAATTGGTTCTGgtaagaacaattctgcatgcttgttccatattgcatttcaataaagaatggtgaataggaagcttgataaaatcaagttctgctagaagatgtgtgaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatcaa