1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttacaaggtcttagttacatgattagtttatatagcttattctcttgatcgtgctgtgaactgatatacttggactaattgcataaccactccctcaagGTTGCCGAAAGGCTCGATACATTCCATGCGTCTGGAGCTAGGAATCAAAATTACATGGCCATGTACTCTAGCATTTTTGGTGGAATTACAACAAACCCTT
species | Zea mays |
transcript | GRMZM2G069596_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGGAACAATTGCCCATGCAAATGAAGTTCCTGTCTTGTCTTTCTCTGAG GTTGCCGAAAGGCTCGATACATTCCATGCGTCTGGAGCTAGGAATCAAAAT
genomic: CCGGAACAATTGCCCATGCAAATGAAGTTCCTGTCTTGTCTTTCTCTGAGgtgtaccttt ... ctccctcaagGTTGCCGAAAGGCTCGATACATTCCATGCGTCTGGAGCTAGGAATCAAAAT
ttgatcgtgctgtgaactgatatacttggactaattgcataaccactccctcaagGTTGCCGAAAGGCTCGATACATTCCATGCGTCTGGAGCTAGGAATCAAAATTACATGGCCATGTACTCTAGCATTTTTGGTGGAATTACAACAAACCCTT
ccactccctc CT-rich tract
atatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacaaggtcttagttacatgattagtttatatagcttattctcttgatcgtgctgtgaactgatatacttggactaattgcataaccactccctcaagGTTGCCGAAAGGCTCGATACATTCCATGCGTCTGGAGCTAGGAATCAAAATTACATGGCCATGTACTCTAGCATTTTTGGTGGAATTACAACAAACCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - cgtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattgca