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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccataaaatcccttgactttattttgtacccacaataatagttactgcttttggaatgccagtttgtttgttttggatatgtatttgtttctgt...

Basic information

species Zea mays
transcript GRMZM2G069174_T02
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94479305|gb|EB708263.1|EB708263
EST:     TGGTGAGCGGCAATGCTTTGTGGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|93282822|gb|EB675086.1|EB675086
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|22715613|gb|BU197864.1|BU197864
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|74246261|gb|DT654175.1|DT654175
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|76015058|gb|DT942228.1|DT942228
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|21809923|gb|BQ668241.1|BQ668241
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGG-GGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|37425821|gb|CF650659.1|CF650659
EST:     TGGTGAGCGGCAATCCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         CCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|23357551|gb|BU645200.1|BU645200
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|101391401|gb|EB817635.1|EB817635
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|32838442|gb|CD978120.1|CD978120
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|211347561|gb|FL462321.1|FL462321
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|22521297|gb|BU080108.1|BU080108
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|87157178|gb|DY401967.1|DY401967
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71763868|gb|DR961805.1|DR961805
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|84969571|gb|DW468004.1|DW468004
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccataaaatcccttgactttattttgtacccacaataatagttactgcttttggaatgccagtttgtttgttttggatatgtatttgtttctgt

- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGA