1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGAAGTCTGCCATTAAATGCCACACCACAACAATTAGAGGAAGAGTTCAAGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgcttttcttcacatttttctaaaaaaactaagagccttcagtgagtctaactctctaatttgtctttgcgtttctgttgaatcaacacag
species | Zea mays |
transcript | GRMZM2G069174_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGGCAGTGCAGTTEST: gi|93282822|gb|EB675086.1|EB675086
genomic: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
EST: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTEST: gi|74246261|gb|DT654175.1|DT654175
genomic: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
EST: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTEST: gi|76015058|gb|DT942228.1|DT942228
genomic: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
EST: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTEST: gi|37425821|gb|CF650659.1|CF650659
genomic: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
EST: CATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGACTTTGAGGATGCCAGTGCAGTTEST: gi|101391401|gb|EB817635.1|EB817635
genomic: CATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
EST: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTEST: gi|32838442|gb|CD978120.1|CD978120
genomic: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
EST: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTEST: gi|71763868|gb|DR961805.1|DR961805
genomic: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
EST: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAG ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
genomic: AGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgctt ... atcaacacagATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAAGTCTGCCATTAAATGCCACACCACAACAATTAGAGGAAGAGTTCAAGAGATTTGGAACCATTAAACATGAAGGCATCCAAGTTAGAAGCAACAAGgtgcatgcttttcttcacatttttctaaaaaaactaagagccttcagtgagtctaactctctaatttgtctttgcgtttctgttgaatcaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA