1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtgatcaatataaactgctcgttttgtcatgcacagcaaagcacagcacagcacctgtttgagtgaattccatgcacgcgcggtcggtgtgtcgctaatcgccggggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGTGGGCACACGCGCAGAGGACGCTCCACGGGCTGCAGCCACCGGATGCCA
species | Zea mays |
transcript | GRMZM2G068259_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: GATCCTGTCATTGAGCAAAGG ATTGCATTTACAAGGAAGAGGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGEST: gi|37388839|gb|CF631634.1|CF631634
genomic: GATCTTGTCATTGAGCAAAGGgtgatcaata ... ggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAG
EST: TCCGATATGCTCTGAGTGGCAAAGCGTGGGATCTTGTCATTGAGCAAAGG ATTGCATTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGEST: gi|6601730|gb|AW256126.1|AW256126
genomic: TCCGATACGCTCTGAGTGGCAAAGCGTGGGATCTTGTCATTGAGCAAAGGgtgatcaata ... ggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAG
EST: TCCGATATGCTCTGAGTGGCAAAGCGTGGGATCTTGTCATTGAGCAAAGG ATTGCATTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGEST: gi|32827858|gb|CD967536.1|CD967536
genomic: TCCGATACGCTCTGAGTGGCAAAGCGTGGGATCTTGTCATTGAGCAAAGGgtgatcaata ... ggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAG
EST: GATCTCGTCATTGAGCAAAGG ATTGCATTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGEST: gi|32823361|gb|CD963083.1|CD963083
genomic: GATCTTGTCATTGAGCAAAGGgtgatcaata ... ggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAG
EST: GATCTTGTCATTGAGCAAAGG ATTGCATTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAG
genomic: GATCTTGTCATTGAGCAAAGGgtgatcaata ... ggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAG
gagtgaattccatgcacgcgcggtcggtgtgtcgctaatcgccggggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGTGGGCACACGCGCAGAGGACGCTCCACGGGCTGCAGCCACCGGATGCCA
cgctaat putative branch site (score: 32)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcaatataaactgctcgttttgtcatgcacagcaaagcacagcacagcacctgtttgagtgaattccatgcacgcgcggtcggtgtgtcgctaatcgccggggttttgcagATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGTGGGCACACGCGCAGAGGACGCTCCACGGGCTGCAGCCACCGGATGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG