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21 5' 3' |
gtatgtttcaaatcagtagcagacgaaaaaaatccaaagggtagatagcagaaaaaaacatgatgacagattaagtattttccccttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTGGAATGACTGGCGATGGAGTAAATGATGCCCCTGCCCTAAAGAAAGCTGA
species | Zea mays |
transcript | GRMZM2G068259_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211432676|gb|FK992873.1|FK992873
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211432672|gb|FK992869.1|FK992869
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211432669|gb|FK992866.1|FK992866
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211055443|gb|FK991550.1|FK991550
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211432674|gb|FK992871.1|FK992871
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211055441|gb|FK991548.1|FK991548
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211432670|gb|FK992867.1|FK992867
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211055439|gb|FK991546.1|FK991546
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211432675|gb|FK992872.1|FK992872
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGEST: gi|211055440|gb|FK991547.1|FK991547
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTGEST: gi|211055442|gb|FK991549.1|FK991549
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
EST: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTG AGCACAAATATGAGATTGTAAAACGTTTGCAAGCACGAAAACACATTTGTG
genomic: TGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTATTCCCTGgtatgtttca ... cttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTG
ggtagatagcagaaaaaaacatgatgacagattaagtattttccccttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTGGAATGACTGGCGATGGAGTAAATGATGCCCCTGCCCTAAAGAAAGCTGA
tattttccccttttct CT-rich tract
agattaagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcaaatcagtagcagacgaaaaaaatccaaagggtagatagcagaaaaaaacatgatgacagattaagtattttccccttttctcagAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTGGAATGACTGGCGATGGAGTAAATGATGCCCCTGCCCTAAAGAAAGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA