1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGGCGCTTCGGCTGATGGAGGGCGACAGGTTCCCATCCATCGGCCTCTACCTCCTCCTGGGCGATCCTTGCAGGACCGGCCGCGCTGCTGCAGGTTGTGgtgaggttcttgcttgcgttgcatgcgtgggcattacaagagactctgcacgcacctagcacttgcaatttacacacgcttgctttcgtcttggacacatgttggtttcag
species | Zea mays |
transcript | GRMZM2G066426_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCCTCCTGGGCGATCCTTGCNAGGAC-GGCCGCGCTGCTGCAGGTTGTG CTNGTACC-ATTACCGACGTCACGGGGAGCCTCGGCGGAGCTACGGCAGCGEST: gi|211192633|gb|FL310810.1|FL310810
genomic: CTCCTCCTGGGCGATCCTTGC-AGGACCGGCCGCGCTGCTGCAGGTTGTGgtgaggttct ... ttggtttcagCT-GTACCCATTACCGACGTCACGGGGAGCCTCGGCGGAGCTACGGCAGCG
EST: CCTCCTCCTGGGCGATCCTTGCAGGACCGGCCGCGCTGCTGCAGGTTGTG CTGTACCCATTACCGACGTCACGGGGAGCCTCGGCGGAGCTACGGCAGCGGEST: gi|148968479|gb|EE019550.2|EE019550
genomic: CCTCCTCCTGGGCGATCCTTGCAGGACCGGCCGCGCTGCTGCAGGTTGTGgtgaggttct ... ttggtttcagCTGTACCCATTACCGACGTCACGGGGAGCCTCGGCGGAGCTACGGCAGCGG
EST: CCTCCTCCTGGGCGATCCTTGCAGGACCGGCCGCGCTGCTGCAGGTTGTG CTGTACCCATTACCGACGTCACGGGGAGCCTCGGCGGAGCTACGGCAGCGG
genomic: CCTCCTCCTGGGCGATCCTTGCAGGACCGGCCGCGCTGCTGCAGGTTGTGgtgaggttct ... ttggtttcagCTGTACCCATTACCGACGTCACGGGGAGCCTCGGCGGAGCTACGGCAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCGCTTCGGCTGATGGAGGGCGACAGGTTCCCATCCATCGGCCTCTACCTCCTCCTGGGCGATCCTTGCAGGACCGGCCGCGCTGCTGCAGGTTGTGgtgaggttcttgcttgcgttgcatgcgtgggcattacaagagactctgcacgcacctagcacttgcaatttacacacgcttgctttcgtcttggacacatgttggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG