1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacctgcctgcttacctaggcgcatggaattcgttagccgcggaaacgatcgggggctgagccattgctgtacatgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGGGTGCGTGCGTGCTCCTCCACTTCATCT
species | Zea mays |
transcript | GRMZM2G066426_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|211519808|gb|FL338567.1|FL338567
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|211192633|gb|FL310810.1|FL310810
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|148968479|gb|EE019550.2|EE019550
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|211341850|gb|FL306854.1|FL306854
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|211040970|gb|FL342201.1|FL342201
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|211005111|gb|FL014942.1|FL014942
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|211537312|gb|FL320567.1|FL320567
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATEST: gi|211005110|gb|FL014941.1|FL014941
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
EST: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAG CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
genomic: GACCGCGGGGTGCGCCCTGGCCACGTCGTCGCCGCCGTCGCCCTCAACAGgtacctgcct ... atgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctgcctgcttacctaggcgcatggaattcgttagccgcggaaacgatcgggggctgagccattgctgtacatgaacgcagCGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGGGTGCGTGCGTGCTCCTCCACTTCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC