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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaagactgaaacgcacaagggttcctcactagtaaatcttccattgttcttgttcggattggtaatgcgtaacatcatgtaaaaacattctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTGGCTCCGAGTGTAGCTTGGGCCCATGGCCGACCGTATGAAAAATCTGCCA

Basic information

species Zea mays
transcript GRMZM2G063258_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94479866|gb|EB708824.1|EB708824
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
EST: gi|71770744|gb|DR968681.1|DR968681
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
EST: gi|87155122|gb|DY399911.1|DY399911
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
EST: gi|149023561|gb|EE154540.2|EE154540
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcttgttcggattggtaatgcgtaacatcatgtaaaaacattctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTGGCTCCGAGTGTAGCTTGGGCCCATGGCCGACCGTATGAAAAATCTGCCA
                       gcgtaac  putative branch site (score: 3)
 cattcttt  putative PPT
 taaaaacattcttt  TA-rich tract