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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcagaattcctcccatggcatcagtttatgcacagggtgtcacctactcatctgtgtaacctgtggttagtggatttgtctacatgtttagGTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAGTACAAGGTCAAAATGCCGGTATTGACAGCGGTGGCACGGATAATTGATA

Basic information

species Zea mays
transcript GRMZM2G063258_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94479866|gb|EB708824.1|EB708824
EST:     GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAG                         GTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
genomic: GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAGgtgtgcagaa ... acatgtttagGTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
EST: gi|71770744|gb|DR968681.1|DR968681
EST:     GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAG                         GTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
genomic: GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAGgtgtgcagaa ... acatgtttagGTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
EST: gi|87155122|gb|DY399911.1|DY399911
EST:     GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAG                         GTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
genomic: GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAGgtgtgcagaa ... acatgtttagGTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
EST: gi|21330849|gb|BQ486230.1|BQ486230
EST:     GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAG                         GTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
genomic: GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAGgtgtgcagaa ... acatgtttagGTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
EST: gi|149023561|gb|EE154540.2|EE154540
EST:     GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAG                         GTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG
genomic: GCCTCGGTTCTGGTGAAAAGCTTGACAGAATCATGGGTTCTATGAATCAGgtgtgcagaa ... acatgtttagGTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtcacctactcatctgtgtaacctgtggttagtggatttgtctacatgtttagGTTGCTGAAGGCGTATCAACTGCTGGGGCTGTCATTGCGTTGGCGCAGAAGTACAAGGTCAAAATGCCGGTATTGACAGCGGTGGCACGGATAATTGATA
                 gtgtaac  putative branch site (score: 3)
                                               atgttta  TA-rich tract