1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acccaagaccgcatttactacgcggtaccccccccccccccccccccctctctctcgccgagccctaaatcgctaaccccgtccgccgctccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCGCCCGCTCCTTCGCCGCCGCTGATGCGACCAGTGGTGGCGACCCTGTCA
species | Zea mays |
transcript | GRMZM2G061485_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|211172672|gb|FL375069.1|FL375069
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGYGCCACATCEST: gi|71329934|gb|DR801689.1|DR801689
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|76280525|gb|DV020093.1|DV020093
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|93017035|gb|EB642555.1|EB642555
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|211042685|gb|FL406384.1|FL406384
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|211304946|gb|FL381245.1|FL381245
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|211408795|gb|FL424192.1|FL424192
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|78079429|gb|DV507841.1|DV507841
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCEST: gi|71321702|gb|DR797544.1|DR797544
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
EST: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAG TCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
genomic: CCACCGCGGCGCCTGACAATTCCGCCGTCGCCACCCCTTCTCTGGCTAAGgtctgttcgt ... ccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATC
ccctctctctcgccgagccctaaatcgctaaccccgtccgccgctccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCGCCCGCTCCTTCGCCGCCGCTGATGCGACCAGTGGTGGCGACCCTGTCA
cgctaac putative branch site (score: 11)
ccgctcc putative PPT
taaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccaagaccgcatttactacgcggtaccccccccccccccccccccctctctctcgccgagccctaaatcgctaaccccgtccgccgctccgattgcagTCGCGTGACCCCCGCTGCTCCGGATGCTCTCCCACCACCGTGCGCCACATCGCCCGCTCCTTCGCCGCCGCTGATGCGACCAGTGGTGGCGACCCTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc