1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagctgtctgtcatcgctcttgtccttcgtttttgtgctcgatatgaacaagtagctagctaactaacgtaacctttcttgctgcattggtttggttatcatcatcatcatcatcatccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAACGTCGAAGTCTACTGATGATGATCCTTCATTGTATTGTTCAGCTCAAG
species | Zea mays |
transcript | GRMZM2G059083_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCACCTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|71316777|gb|DR795075.1|DR795075
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|78085944|gb|DV514337.1|DV514337
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32924659|gb|CF029471.1|CF029471
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCACCTGGTTGGACTACAAGAAGCACCTCCAGAAGAGCGAGCAATGGAEST: gi|76935133|gb|DV174192.1|DV174192
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATTGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32828698|gb|CD968376.1|CD968376
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: TCGCGGCCGAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|5791146|gb|AI977938.1|AI977938
genomic: TCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32926372|gb|CF031184.1|CF031184
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|13558261|gb|BG549617.1|BG549617
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|116825460|gb|EC869184.1|EC869184
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32924752|gb|CF029564.1|CF029564
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTGCAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32926942|gb|CF031754.1|CF031754
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCACCTGGTTGGACTCCAAGAAGCAGCTCAAGAAGACCGAGCAATGGAEST: gi|13150081|gb|BG320403.1|BG320403
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|13557876|gb|BG549232.1|BG549232
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAAAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32925878|gb|CF030690.1|CF030690
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32848675|gb|CD988356.1|CD988356
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCCAGAAGAGCGAGCAATGGAEST: gi|13557960|gb|BG549316.1|BG549316
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGAAATACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|74238896|gb|DT646810.1|DT646810
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTCCAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|148968309|gb|EE019500.2|EE019500
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATTGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGGCTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|78021596|gb|DV489983.1|DV489983
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|13382262|gb|BG458937.1|BG458937
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|5757295|gb|AI964582.1|AI964582
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGNCGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGGCTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32924694|gb|CF029506.1|CF029506
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCT-GGGGCCAAGGACG GGATCAACTGGGTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|13558616|gb|BG549972.1|BG549972
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|113657592|gb|DW813320.1|DW813320
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGEST: gi|116819432|gb|EC862549.1|EC862549
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAA-CTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCG
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|116821431|gb|EC864731.1|EC864731
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|161407577|gb|DW042401.1|DW042401
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32849555|gb|CD989236.1|CD989236
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|9954079|gb|BE640662.1|BE640662
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32920922|gb|CF025734.1|CF025734
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|5791046|gb|AI977838.1|AI977838
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32850378|gb|CD990059.1|CD990059
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32926512|gb|CF031324.1|CF031324
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCACCTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|110541331|gb|EE045251.1|EE045251
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTGGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|5740424|gb|AI948114.1|AI948114
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|110536901|gb|EE041015.1|EE041015
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|13515779|gb|BG518055.1|BG518055
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|13249967|gb|BG360872.1|BG360872
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGATCAAGAAGAGCGAGCAATGGAEST: gi|14208424|gb|BG842102.1|BG842102
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32829789|gb|CD969467.1|CD969467
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: TCGCGGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|14208406|gb|BG842084.1|BG842084
genomic: TCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|116820971|gb|EC864239.1|EC864239
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|1713337|gb|AA143932.1|AA143932
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|71420120|gb|DR805018.1|DR805018
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|31405961|gb|CD484693.1|CD484693
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|13381685|gb|BG458465.1|BG458465
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|6918750|gb|AW400280.1|AW400280
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|8665396|gb|BE186212.1|BE186212
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|94474502|gb|EB703460.1|EB703460
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATTGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32926577|gb|CF031389.1|CF031389
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|211166961|gb|FL442998.1|FL442998
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32926861|gb|CF031673.1|CF031673
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCACCTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|89249821|gb|DY621607.1|DY621607
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATGGACGACATCATGCTCGACCTCGCACCCAAGGACG GGATCAACTGGTTGGACTCCAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|5757291|gb|AI964578.1|AI964578
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|116819680|gb|EC862828.1|EC862828
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: ATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGACAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|76015964|gb|DT943134.1|DT943134
genomic: ATGGAGAAGGGCATCGACGACATCATGCTCGACCTCG-CAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTCCAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32926294|gb|CF031106.1|CF031106
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAEST: gi|5761833|gb|AI966986.1|AI966986
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAACAACAGCGAGCAATGGAEST: gi|14569158|gb|BI097481.1|BI097481
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACG GGATCAACTGGTTGGACTACAAAAAACAGCTCAAGAAGAGCGAGCAATGGAEST: gi|32925793|gb|CF030605.1|CF030605
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCGAGGACG GGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTCGCAGCCAAGGACGgtaagctgtc ... catccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGA
taacctttcttgctgcattggtttggttatcatcatcatcatcatcatccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAACGTCGAAGTCTACTGATGATGATCCTTCATTGTATTGTTCAGCTCAAG
acgtaac putative branch site (score: 83)
ttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgtctgtcatcgctcttgtccttcgtttttgtgctcgatatgaacaagtagctagctaactaacgtaacctttcttgctgcattggtttggttatcatcatcatcatcatcatccgtcagGGATCAACTGGTTGGACTACAAGAAGCAGCTCAAGAAGAGCGAGCAATGGAACGTCGAAGTCTACTGATGATGATCCTTCATTGTATTGTTCAGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA