1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagagttagagtcagctcatccatccatctagctagctatccctccatgaaaccgcttatcatctcgcactggtaaatcctgatgtgttcatcag
species | Zea mays |
transcript | GRMZM2G059083_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|76935133|gb|DV174192.1|DV174192
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: AACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|5791146|gb|AI977938.1|AI977938
genomic: AACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGG-AA-GAGATGCTCATGCCCAAAGACCCCAACGCANCAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|13150081|gb|BG320403.1|BG320403
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|211014995|gb|FL081548.1|FL081548
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|148968309|gb|EE019500.2|EE019500
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|78021596|gb|DV489983.1|DV489983
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|78085945|gb|DV514338.1|DV514338
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|13315987|gb|BG410434.1|BG410434
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|5791046|gb|AI977838.1|AI977838
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: ACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|13315986|gb|BG410433.1|BG410433
genomic: ACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|76015965|gb|DT943135.1|DT943135
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|71420120|gb|DR805018.1|DR805018
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|31405961|gb|CD484693.1|CD484693
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|6918750|gb|AW400280.1|AW400280
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|94474502|gb|EB703460.1|EB703460
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|89249821|gb|DY621607.1|DY621607
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGCCAAGGAGATGTTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|6952551|gb|AW424619.1|AW424619
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGCTACCGGCATCGCTCCGTTCCGCTCCTTCTTGNGGAAGATGEST: gi|13382263|gb|BG458938.1|BG458938
genomic: TGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGEST: gi|13126400|gb|BG316970.1|BG316970
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAG
EST: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGEST: gi|76015964|gb|DT943134.1|DT943134
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
EST: GGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
genomic: TGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagag ... tgttcatcagCTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATGgtgagtagagttagagtcagctcatccatccatctagctagctatccctccatgaaaccgcttatcatctcgcactggtaaatcctgatgtgttcatcag
- - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG