1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAGGCTGATGTGTTCCATATACTTTCAGGCATGTGGAAAACATCTGCTGAAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAGgtgcatgcatatgatatagatcaagttatatgaaaccacctttgatttcaaatagtcttggtacctgcctcaaaatgactgacaccccacacaccataat...
species | Zea mays |
transcript | GRMZM2G056099_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAARGTGCYTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAG CTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCTEST: gi|67014815|gb|CO443564.1|CO443564
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAGgtgcatgcat ... aaaattgcagCTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCT
EST: AAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAG CTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCTAEST: gi|60397549|gb|DN230365.1|DN230365
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAGgtgcatgcat ... aaaattgcagCTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCTG
EST: AAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAG CTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCTGEST: gi|211277779|gb|FL330877.1|FL330877
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAGgtgcatgcat ... aaaattgcagCTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCTG
EST: AAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAG CTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCTA
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAGgtgcatgcat ... aaaattgcagCTCCTTGTGAATCAGCTTGAGCCTCTAACTGAGCAGCAATTGATGGGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCTGATGTGTTCCATATACTTTCAGGCATGTGGAAAACATCTGCTGAAAGGTGCTTCTTGTGGCTTGGGGGTTTCCGTTCGTCTGAGCTTCTAAAGgtgcatgcatatgatatagatcaagttatatgaaaccacctttgatttcaaatagtcttggtacctgcctcaaaatgactgacaccccacacaccataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT