1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAGgtattattagcatgactgtgtacacctgggatctattcctacatttttggtgcagtgtgtcactccctgatgcatgcatgtatgtgcactagtgtgaatc...
species | Zea mays |
transcript | GRMZM2G056099_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAG GCATATGTGCAACAGCTAGAGAGCAGTAAGCTAAAACTTGCAAGCCTGGAGEST: gi|60397549|gb|DN230365.1|DN230365
genomic: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAGgtattattag ... gttttcaaagGCATATGTGCAACAGCTAGAGAGCAGTAAGCTAAAACTTGCAAGCCTGGAG
EST: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAG GCATATGTGCAACAGCTAGAGAGCAGTAAGCTAAAACTTGCAAGCCTGGAGEST: gi|50323433|gb|CO518559.1|CO518559
genomic: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAGgtattattag ... gttttcaaagGCATATGTGCAACAGCTAGAGAGCAGTAAGCTAAAACTTGCAAGCCTGGAG
EST: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAG GCATATGTGCAACAGCTAGAGAGCAGTAAGCTAAAACTT
genomic: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAGgtattattag ... gttttcaaagGCATATGTGCAACAGCTAGAGAGCAGTAAGCTAAAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAGgtattattagcatgactgtgtacacctgggatctattcctacatttttggtgcagtgtgtcactccctgatgcatgcatgtatgtgcactagtgtgaatc
- - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - AAGAAA