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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttaaaaaaatactttgtttgagaattgtggtgctaatag

Basic information

species Zea mays
transcript GRMZM2G055854_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaat--attctgaagatccaaatagcactatgcttttggtatacttttaaaaaaatactttgtttgagaattgtggtgctaatag----------------
|||||||||||| || |||||||||||||| || ||||| |||||||||||||||||||| || ||||| || || || |||||||||||||||||||||||||||| | |  |        ||  ||  | |  |     | || |  ||| |||| |     ||||         ||       |  |  |||   || ||                  
TTTTGAGGTTCTCGGAGACAATGACTCTCCAGTTATGCCAATAATGCTCTACAATCCAGCCAAAATTCCAGCTTTTTCCAGGGAGTGCCTTAGACAAAAGgttagtaatggtatagaatgctatttatcttcagaaatggtacagaataatggtttttgccagttttttgtcgttccctagcccctattaccgtgcgactgatgtggcactggcatttcag

upper sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaatattctgaagatccaaatagcactatgcttttgg-tatacttttaaaaaaatactt--tgtttgagaattgtggtgctaatag
 |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| || || || || ||||| ||||| || |||||||| |  || || || ||    |   |    |   ||  ||         |     ||  |||  |  |  |  | || | ||  |||  ||    |||  |||||  |          
ATTTGAGGTTCTTGGGGATAATGATTCTCCAGTAATGCCAATCATGCTTTACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAATgtaagatcaaacatccaactttatgctccttgtcgataccctacatcatgtataagaatgaaattgttaatcaatgtttaccatttttgaattcag----------

upper sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtag-tagagtttgtc----agaatattctgaagatccaaatagcactatgcttttggtatacttttaaaaaaatactttgtttgagaattgtggtgctaatag
 ||||| |||||||| |||||||| || || |||||||| |||||||| ||||||||||| || ||||| |||||||| ||||| ||  |  || |||| ||||||   |   | || ||    | |||||| |      |       ||  |  ||       ||  || ||   |  |     |||| |||  |            
GTTTGAAGTTCTTGGAGACAATGATTCACCAGTCATGCCAATAATGCTTTACAATCCAGCAAAAATTCCAGCATTCTCAAGGGAATGTTTGCGAGAAAACgttagtttctcttgcttttcttaaaaaatatttttttttgcttccacacaagagactcacctcctatgttcaacggataatgaaatttgtgaacag------------

upper sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 11
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaatattctgaagatccaaatagcactatgctt--ttggtatacttttaa---aaaaatactttgtttgagaattgtg--gtgctaatag----------------------------------------------------------
 |||||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| || |||||||| || ||  ||||||| || | ||| || || ||   ||   ||  |    |||   | |  || ||  |      || |||  ||    ||  |  ||   | | || |   ||     | ||||   |  ||  |                                                            
CTTTGAGGTTCTTGGAGATAATGATTCTCCTGTAATGCCAATAATGCTTTACAATCCAGCCAAAATTCCTGCCTTTTCGCGGGAGTGTCTCAAACAGAATgtaagctttatctttaatttctatacattcaccattcatgtcttttcattcttgattaaagtagctgcaatacagagattccaagtcattcatttgtatagcactgctcattaatctccagttcaagttcacttgtgtggctagtattgacaagttatgctgttccag

upper sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagt--agtagagtttgtcagaatattctgaagatccaaatagcactatg--cttttggtatacttttaaaaaa---atactttgtttgagaattgtggtgctaatag------------------------------------
||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||| |  || |||||||| |||||  | |||||||| |  ||||| || |||  |  |     ||   |  |  | | |  ||    ||  || | ||  ||||| |   |  | || |  |    | |||    ||  |    |  | || ||                                      
TTTTGAGGTTCTTGGGGATAATGACTCTCCAGTGATGCCAATAATGCTTTATAATCCTGGCAAAATTCCTGCCTTCTCGCGAGAGTGCCTCAAGCAAAATgtgagtccatcaagacatgcacgtgtcctataactatgattattccattctggacttttagctcatgtctatatgacctgtccttcaaatggcacagtttattctcatttcatggctttttatcaaagtcaatggtgctgttacag

upper sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 8
lower sequence: EFJ20689 (Selaginella moellendorffii), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttaaaaaaatactttgtttgagaattgtggtgctaatag
 |||||||| || |||||||  |||||||| || ||||| || ||||| ||||||||||| ||||| || || |||  | | |||||||| || | ||| || |||  | |    | | |         | |  |||  ||    || |   |||  ||                                            
ATTTGAGGTCCTGGGTGACAGAGACTCTCCAGTTATGCCGATTATGCTTTACAATCCAGCAAAGATCCCCGCCTTCAGTCGCGAGTGCCTCAGGCGAAATgtaagtccttgcaactttgaag------cggaagtcctgatttttctttctgttttatag-------------------------------------------

upper sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 8
lower sequence: EFJ32734 (Selaginella moellendorffii), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCAGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttaaaaaaatactttgtttgagaattgtggtgctaatag
 |||||||| || |||||||  |||||||| || ||||| || ||||| ||||||||||| ||||| || || |||  | | |||||||| || | ||| || |||       ||||  |   |     | |  ||   ||    || |   |||  ||                                            
ATTTGAGGTCCTGGGTGACAGAGACTCTCCAGTTATGCCGATTATGCTTTACAATCCAGCAAAGATCCCCGCCTTCAGTCGCGAGTGCCTCAGGCGAAATgtaagtc------tttgcaactttgaagcggaagtcttgattcttctttctgttttatag-------------------------------------------