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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatataatgatgggtacttttaccaagtcttttggatcatgtggtggatatattgtcgcgtcaaatgtgcatactactgaaagtgactgtattacactatagcacttggtaagattgcattgaagatttgctgattcttttcactataacttttagGAGATAATTCAGCACCTTAAACATAGTTGTCCGCCCCATCTGTATGCTACTTCCATGTCGCCACCAGGAGTCCAACATGTTATTTCTGCTATTAAAGTTA

Basic information

species Zea mays
transcript GRMZM2G055854_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055854_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 8
gtagatataatgatgggtacttttaccaagtcttttggatcatgtggtggatatattgtcgcgtcaaatgtgcatactactgaaagtgactgtattacactatagcacttggtaagattgc----attgaagatttgctgattcttttcactataacttttagGAGATAATTCAGCACCTTAAACATAGTTGTCCGCCCCATCTGTATGCTACTTCCATGTCGCCACCAGGAGTCCAACATGTTATTTCTGCTATTAAAGTTA
                                                                                           |||   |   | |||||||  |    ||||    |||||| |||| |||||||   |  ||  |||| | ||||||||||||||||||| || | ||| || ||  | ||| | |||||||| |||||||| ||||||| ||| ||||| |||||||| || |||||||| |
-------------------------------------------------------------------------------------------gtacatcttcagagcacttctttcagttgcttgaattgaaaatttactgattcaccttgcttgaactctcagGAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACCTCCATGTCACCACCAGCAGTACAACAAGTTATTTCAGCCATTAAAGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacttggtaagattgcattgaagatttgctgattcttttcactataacttttagGAGATAATTCAGCACCTTAAACATAGTTGTCCGCCCCATCTGTATGCTACTTCCATGTCGCCACCAGGAGTCCAACATGTTATTTCTGCTATTAAAGTTA
                                          ctataac  putative branch site (score: 3)
                                                ctttt  CT-rich tract
                                           tataactttta  TA-rich tract