1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGGATTCGACCTGGACACCTCTTCACCTGCGGTCCTGGTTCTTACAAAATACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatattaagttcatattcacatttttgtagcagttgttttcctttttgggaaaagaaccagaccttactgatgaagttattttaactgttagtgt...
species | Zea mays |
transcript | GRMZM2G050984_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|60395383|gb|DN228252.1|DN228252
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|67016938|gb|CO445687.1|CO445687
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|14204330|gb|BG838007.1|BG838007
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|14204197|gb|BG837874.1|BG837874
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|45567638|gb|CK985669.1|CK985669
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|211338067|gb|FL010980.1|FL010980
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTCAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|78023637|gb|DV492024.1|DV492024
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTTTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCAEST: gi|6022258|gb|AW067186.1|AW067186
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAG GGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
genomic: TACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatat ... ttcgttgcagGGTGTTCCAAATCCAAAGGCTATTCATTCTTCCAAAGCCGTGGGAGAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATTCGACCTGGACACCTCTTCACCTGCGGTCCTGGTTCTTACAAAATACCCTCTGTAAATGATATACCTCTGAATTTCAAGGTTTCTCTATTAAAGgtaaatatattaagttcatattcacatttttgtagcagttgttttcctttttgggaaaagaaccagaccttactgatgaagttattttaactgttagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagaa