1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCTTTCCGAGGTTTTGGTGGTCCACAAGGCTTGTTGATTGCAGAGAATTGGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAAgtaagcataaacttgcgctgtgaatggcactggccttgtcaaactattgtgagattaacctatttgagtcttgacag
species | Zea mays |
transcript | GRMZM2G050984_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAA GAACTTAATTTTCACAATGATGGAGTTGTGCTACATTATGGCCAGTTGCTCEST: gi|211407494|gb|FL354753.1|FL354753
genomic: GGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAAgtaagcataa ... gtcttgacagGAACTTAATTTTCACAATGATGGAGTTGTGCTACATTATGGCCAGTTGCTC
EST: GGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAA GAACTTAATTTTCACAATGATGGAGTTGTGCTACATTATGGCCAGTTGCTCEST: gi|211103218|gb|FL316259.1|FL316259
genomic: GGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAAgtaagcataa ... gtcttgacagGAACTTAATTTTCACAATGATGGAGTTGTGCTACATTATGGCCAGTTGCTC
EST: GGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAA GAAACTTA-TTTTNCACA-TGATGGAGTTGTGCTACATTATGGCCAGTTGC
genomic: GGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAAgtaagcataa ... gtcttgacagGAA-CTTAATTTT-CACAATGATGGAGTTGTGCTACATTATGGCCAGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTTCCGAGGTTTTGGTGGTCCACAAGGCTTGTTGATTGCAGAGAATTGGATTCACCATATAGCTACAGAACTCCAACGAAGTCCTGAAGAGATAAAAgtaagcataaacttgcgctgtgaatggcactggccttgtcaaactattgtgagattaacctatttgagtcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA