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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatatatgctatttataatgagaatgctttggtcacttgacattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg...

Basic information

species Zea mays
transcript GRMZM2G049155_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g10710.2 (Oryza sativa), 5'ss of exon 7
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatatatgctatttataatgagaat----gctttggtcacttgacattttcat-atcttcctttcctatattctttttgttttttaattcgac-actggatgg
|  || ||||   ||| ||||||||| ||||| || |||||| | ||||||||||||||||||||| ||||   |  |  || |||    |||  ||       ||  |||||| |  |||||||  | |||       | |||   |||     |  |||  |  | |||    
GATCTGTATGCATTGGCTTATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtt--tgcaacctttttcctgtgaacatttgaaaattcttcactttaggttttcattgttttctaggggaacattgcatttaaaaatctattgaattattgg----

upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G02360.1 (Glycine max), 5'ss of exon 7
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatat-atgctatttataatgagaatgctttggtcacttgacattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg
|| ||  |||   |||||||||| || ||| | ||||||||||| |||||||||||  |||||||||||||  || | |   |||| ||| |       || |  |      ||| | |  | |   | |     ||  | || || | |||| |  | ||| |      
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTCAATCTTAAAGAGgtcaattttacaatattaatattcttctgtctatcattcacatacaatctagttttagcgtcgttcattcttttcttttctttttaagcaacatttctct-

upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G17250.1 (Glycine max), 5'ss of exon 6
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatatatgc-tat-ttataatgagaatgctttggtcacttgacattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg
||||   |||   |||||||||| |||||||  | |||||| || ||||| ||||||||||| ||||||||| || | | | |||  | |  ||   ||  |  |  || |    | ||   | ||   ||||       | | ||   ||           |    ||  
GGCCGGCATGCTTTGGTTTATGATATTAATAAAGTAAATGAGACTTGGGAATGGGTTGATCTCAAAGAGgtatatgttttcctatgctgtgctgcatata-tcagagcagtaattaattaggtttcaatctttgaacagctatattgagttgaagcactagtaaaaaata-

upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatatatgctatttataatgagaatgctttggtcacttg---acattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg
|| ||  |||   |||||||||| || ||| | ||||||||||| |||||||||||| |||||||||||||| |  | | | || | ||||     | | |   ||| |     ||| | |  | |   | |      |  | || || | |||| |  | | | |      
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattttacaatat-taatattcttccgtctatcattcacatacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc--

upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G30890.1 (Glycine max), 5'ss of exon 5
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatatatgc-tat-ttataatgagaatgctttggtcacttgacattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg
||||   |||   |||||||||| |||||||  | |||||| || ||||| ||||||||||| ||||||||| |||| | | |||  | |  ||   ||  |  |  || |    | ||   | ||   ||||   | | |  | |||  |           |    ||  
GGCCGGCATGCTTTGGTTTATGATATTAATAAAGTAAATGAGACTTGGGAATGGGTTGATCTCAAAGAGgtatatattttcctatgctgtgctgcatata-tcagagcagtaattagttaggtttcaatctttta-acagttatattgagtgaagccctagtaaaaaatat

upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 6
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatat-atgctatttataatgagaatgctt--tggtcactt----gacattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg
|| |   |||  ||||||||||| ||||||||  |||||||||| ||||| |||||  |||| |||||||||  | | ||| |   | |  |    |||||   || |    |     | | |  || |  ||  ||   || ||   |||| ||   | || |  |  || |   
GGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgcct-tcctatatatgctcaatgattgtcttaaaaaaaataccacaatttttttgtttaaat---ttttattaactcatacagctatgaa---