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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttttactatactggggtagttacttctcgtttaagcctccagctctttcttaggaaattcattgcagGGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAG

Basic information

species Zea mays
transcript GRMZM2G049155_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049155_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os09g10710.3 (Oryza sativa), 3'ss of exon 6
gtgcgtt-ttactatactggggtagt--tacttctcgtttaagcctccagctctttcttaggaaattcattgcagGGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAG
||  ||| |||||  | |   |      | ||  |  || | ||||   |   ||||| ||| | | |||||||||  || ||||   ||| ||||||||| ||||| || |||||| | ||||||||||||||||||||| ||
gtttgttcttacttcattatagctacagttctgttgattcaggcctttgggcttttctaagggattccattgcagGATCTGTATGCATTGGCTTATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG

upper sequence: GRMZM2G049155_T03 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA18G02360.1 (Glycine max), 3'ss of exon 6
--------------------------gtgcgttt-tactatactg--gggtagttacttctcgtttaagcctccagctctttcttaggaaattcattgcagGGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAG
                          ||| |||| || ||||||    |  | | |    |   |  |  |      | |||||    | ||   ||| |||| ||  |||   |||||||||| || ||| | ||||||||||| |||||||||||  |||||||||||
gttcctctaacaacaatgctgctgaggtgtgtttatagtatactattagaaactgaggaatgcatggactcctttaatatttctatttacatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTCAATCTTAAAGAG

upper sequence: GRMZM2G049155_T03 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G39100.1 (Glycine max), 3'ss of exon 4
gtgcgttt-tactatactg--gggtagttacttctcgtttaagcctccagctctttcttaggaaattcattgcagGGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAG
||| |||| || ||||||    |  | | |    |   |  |  |      | |||||    | ||   ||| |||| ||  |||   |||||||||| || ||| | ||||||||||| |||||||||||| |||||||||||
gtgtgtttatagtatactattagaaactgaggaatacatggactcctttaatatttctatttacatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAG

upper sequence: GRMZM2G049155_T03 (Zea mays), 3'ss of exon 5
lower sequence: Vv06s0004g01350.t01 (Vitis vinifera), 3'ss of exon 5
gtgcgttttactat---actggggtagttacttct-cgtttaagcctccagctctttcttaggaaattca-----ttgcagGGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAG
||   ||||||| |   |||     |  | |   | | | | || || |  ||    ||    |  || |     || ||||| |   |||  ||||||||||| ||||||||  |||||||||| ||||| |||||  |||| ||||||
gtatattttactttttgactacataatgtgccagtacatatgaggcttcttcttaacctcgctattttgaaaaatttccagGGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggtagttacttctcgtttaagcctccagctctttcttaggaaattcattgcagGGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAG
                                          aaattcatt  TA-rich tract