1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acaaaaccataatgcataggctccttcatatccaaaaacctttttgttgccaaacaaatgagcctgcattaataccgtcattcctgtaatatgcatttagGTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTGGAACCTGCAGAAGAACCAATATATGTTAATGCAAAACAATACCATGCAA
species | Zea mays |
transcript | GRMZM2G040349_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATT GTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTGEST: gi|149028984|gb|EE286170.2|EE286170
genomic: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATTgtatgttcac ... atgcatttagGTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTG
EST: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATT GTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTGEST: gi|76015258|gb|DT942428.1|DT942428
genomic: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATTgtatgttcac ... atgcatttagGTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTG
EST: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATT GTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTGEST: gi|74233446|gb|DT641360.1|DT641360
genomic: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATTgtatgttcac ... atgcatttagGTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTG
EST: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATT GTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTG
genomic: CTTATTATAGTGCGGTTGGGGTCTTGACAGGATATCCTCCACATGCCATTgtatgttcac ... atgcatttagGTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTG
gttgccaaacaaatgagcctgcattaataccgtcattcctgtaatatgcatttagGTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTGGAACCTGCAGAAGAACCAATATATGTTAATGCAAAACAATACCATGCAA
cattaat putative branch site (score: 191)
attaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaaccataatgcataggctccttcatatccaaaaacctttttgttgccaaacaaatgagcctgcattaataccgtcattcctgtaatatgcatttagGTCCATCCCCAGCAAAATGATACAACGAACACTCCGGGTATGTTACCTGTGGAACCTGCAGAAGAACCAATATATGTTAATGCAAAACAATACCATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-caaaacca
- - - - - -atgcata
- - - - - - - - - ggctcct
- - - - - - - - - - - - - - - - caaaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcct