1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatcttggcctttgaaacaatgttcccctgtccaagactaatatctaataaggtttattgatacataaccaccatcatgaaagtgtatttttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATTGTCCTTGGGGAAGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTA
species | Zea mays |
transcript | GRMZM2G040349_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|149028984|gb|EE286170.2|EE286170
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|76015258|gb|DT942428.1|DT942428
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|74233446|gb|DT641360.1|DT641360
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
taataaggtttattgatacataaccaccatcatgaaagtgtatttttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATTGTCCTTGGGGAAGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTA
acataac putative branch site (score: 72)
tttttgtcttc putative PPT
tttattgatacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcttggcctttgaaacaatgttcccctgtccaagactaatatctaataaggtttattgatacataaccaccatcatgaaagtgtatttttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATTGTCCTTGGGGAAGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - aaacaat
- - - - - - - - - - - -tcccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattt