1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...accccctacatgggatattgggatgcgatagctatagatacacgtgtataccctggtatgtacatggacaaagtacgtactgaatatttgtatgatgcagAATGCAGGCAGCTGCCGGGTCGCCGGCAGGGAAGCATGCTGAGGTAGCCTGGTTCTTGCGGCCACCCTTGGCACACCAGAGTAGTGGTGGTGGTGGTGGT
species | Zea mays |
transcript | GRMZM2G039074_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCTTCGAAGCGTTTAGCAACGGTACTTCTAATGCTACCGCCAATAATAG AATGCAGGCAGCTGCCGGGTCGCCGGCAGGGAAGCATGCTGAAGTAGCCTGEST: gi|89758250|gb|DY687502.1|DY687502
genomic: GGCTTCGAAGCGTTTAGCAACGGTACTTCTAATGCTACCGCCAATAATAGgttagtacac ... tatgatgcagAATGCAGGCAGCTGCCGGGTCGCCGGCAGGGAAGCATGCTGAGGTAGCCTG
EST: GGCTTCGAAGCGTTTAGCAACGGTACTTCTAATGCTACCGCCAATAATAG AATGCAGGCAGCTGCCGGGTCGCCGGCAGGGAAGCATGCTGAGGTAGCCTG
genomic: GGCTTCGAAGCGTTTAGCAACGGTACTTCTAATGCTACCGCCAATAATAGgttagtacac ... tatgatgcagAATGCAGGCAGCTGCCGGGTCGCCGGCAGGGAAGCATGCTGAGGTAGCCTG
gtataccctggtatgtacatggacaaagtacgtactgaatatttgtatgatgcagAATGCAGGCAGCTGCCGGGTCGCCGGCAGGGAAGCATGCTGAGGTAGCCTGGTTCTTGCGGCCACCCTTGGCACACCAGAGTAGTGGTGGTGGTGGTGGT
aatatttgtatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accccctacatgggatattgggatgcgatagctatagatacacgtgtataccctggtatgtacatggacaaagtacgtactgaatatttgtatgatgcagAATGCAGGCAGCTGCCGGGTCGCCGGCAGGGAAGCATGCTGAGGTAGCCTGGTTCTTGCGGCCACCCTTGGCACACCAGAGTAGTGGTGGTGGTGGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -ctacatg
- - - - - - - - - -gggatgc
- - - - - - - - - - - - - - - - - - gatacac
- - - - - - - - - - - - - - - - - - - - - - - - taccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgaat