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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatatacctgtcaactgcagattcatattagtttttgtcaagcagattctgataaaagttgattatgctatgtag

Basic information

species Zea mays
transcript GRMZM2G038309_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038309_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 5'ss of exon 6
GCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagc-atatacctgtca----actgcagattcatatt-agtttttgtcaagcagattctgataaaagttgattatgc--tatgtag
||||||||||| ||||| || || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||   | |||      | |    | |  ||    |||  | | ||||    |||| ||     ||| | |  ||| |||
GCTTTAGGAGACCATGGATTTCCAGTTCCCACTGCTGTTGACTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCACTgtaagtgacatcattatcattaagttactatctaaggtttgagtttctttaggcaggaattgatcaagtgccatttttccttatatag

upper sequence: GRMZM2G038309_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatatacctgtcaactgcagattcatattagtttttgtcaagcag-----attctgataaaagttgattatgctatgtag----------------
||||| | ||| ||||||||||||||||||| ||| ||||| || ||  | ||||||||| | ||||||||||| || || ||||| ||||||| || | |    ||| | | || |  | ||   |||  |   |||      | |||  ||   |||  || |  | | | |                
GCTTTGGAAGAACATGGTTTCCCTGTTCCAAATGCCGTGGACTGTAATAGACATTGTGTGGTTATGTCACTTGTCCAAGGTTATCCACTgtaaggat-tcctatccaatttcggaatgtttttgcatttcatatcgcaacccttagtcttttatgcgtttttttttgttttttgttgcacctttaaattt